Files in scmeth
Functions to conduct quality control analysis in methylation data
README.md
scmeth documentation built on Nov. 8, 2020, 6:21 p.m.
NAMESPACE
DESCRIPTION
build/vignette.rds
R/cpgDensity.R
R/repMask.R
R/coverage.R
R/methylationDist.R
R/chromosomeCoverage.R
R/bsConversionPlot.R
R/scmeth.R
R/report.R
R/featureCoverage.R
R/cpgDiscretization.R
R/downsample.R
R/mbiasPlot.R
R/readmetrics.R
vignettes/my-vignette.Rmd
man/repMask.Rd
man/coverage.Rd
man/featureCoverage.Rd
man/scmeth.Rd
man/report.Rd
man/downsample.Rd
man/chromosomeCoverage.Rd
man/cpgDiscretization.Rd
man/methylationDist.Rd
man/cpgDensity.Rd
man/readmetrics.Rd
man/mbiasplot.Rd
man/bsConversionPlot.Rd
inst/qcReport.Rmd
inst/NEWS
inst/doc/my-vignette.R
inst/doc/my-vignette.html
inst/doc/my-vignette.Rmd
inst/extdata/sc-RRBS-zygote_02.read_metrics.txt
inst/extdata/sc-RRBS-zygote_03.read_metrics.txt
inst/extdata/2017-04-21_HG23KBCXY_2_AGGCAGAA_TATCTC_pe.M-bias.txt
inst/extdata/16_trimmed_sorted.txt
inst/extdata/sc-RRBS-zygote_01.read_metrics.txt
inst/extdata/sc-RRBS_zyg_03_chr1_CpG.bedGraph
inst/extdata/sc-RRBS_zyg_02_chr1_CpG.bedGraph
inst/extdata/sc-RRBS-zygote_03.bsConv.txt
inst/extdata/sc-RRBS_zyg_01_chr1_CpG.bedGraph
inst/extdata/sc-RRBS-zygote_01.bsConv.txt
inst/extdata/sc-RRBS-zygote_02.bsConv.txt
inst/extdata/bsObject.rda
inst/extdata/bismark_data/assays.h5
inst/extdata/bismark_data/se.rds
