Files in scmeth
Functions to conduct quality control analysis in methylation data

README.md
NAMESPACE
DESCRIPTION
build/vignette.rds
R/cpgDensity.R R/repMask.R R/coverage.R R/methylationDist.R R/chromosomeCoverage.R R/bsConversionPlot.R R/scmeth.R R/report.R R/featureCoverage.R R/cpgDiscretization.R R/downsample.R R/mbiasPlot.R R/readmetrics.R vignettes/my-vignette.Rmd man/repMask.Rd man/coverage.Rd man/featureCoverage.Rd man/scmeth.Rd man/report.Rd man/downsample.Rd man/chromosomeCoverage.Rd man/cpgDiscretization.Rd man/methylationDist.Rd man/cpgDensity.Rd man/readmetrics.Rd man/mbiasplot.Rd man/bsConversionPlot.Rd inst/qcReport.Rmd
inst/NEWS
inst/doc/my-vignette.R
inst/doc/my-vignette.html
inst/doc/my-vignette.Rmd
inst/extdata/sc-RRBS-zygote_02.read_metrics.txt
inst/extdata/sc-RRBS-zygote_03.read_metrics.txt
inst/extdata/2017-04-21_HG23KBCXY_2_AGGCAGAA_TATCTC_pe.M-bias.txt
inst/extdata/16_trimmed_sorted.txt
inst/extdata/sc-RRBS-zygote_01.read_metrics.txt
inst/extdata/sc-RRBS_zyg_03_chr1_CpG.bedGraph
inst/extdata/sc-RRBS_zyg_02_chr1_CpG.bedGraph
inst/extdata/sc-RRBS-zygote_03.bsConv.txt
inst/extdata/sc-RRBS_zyg_01_chr1_CpG.bedGraph
inst/extdata/sc-RRBS-zygote_01.bsConv.txt
inst/extdata/sc-RRBS-zygote_02.bsConv.txt
inst/extdata/bsObject.rda
inst/extdata/bismark_data/assays.h5
inst/extdata/bismark_data/se.rds
scmeth documentation built on Nov. 8, 2020, 6:21 p.m.