featureCoverage: Coverage based on the genomic feature
In scmeth: Functions to conduct quality control analysis in methylation data

Description Usage Arguments Value Examples

Provides Coverage metrics for the sample by each genomic features provided by the user

1	featureCoverage(bs, features, genomebuild)

`bs`	bsseq object
`features`	list of genomic features, e.g. genes_exons, genes_introns, cpg_islands, cpg_shelves Names are based on the annotatr packages, so all the features provided by the annotatr package will be supported in this function
`genomebuild`	reference alignment, i.e. mm10 or hg38

a data frame with genomic feature names and the number of CpG covered in each feature

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directory <- system.file("extdata/bismark_data", package='scmeth')
bs <- HDF5Array::loadHDF5SummarizedExperiment(directory)
featureCoverage(bs, c('cpg_islands', 'cpg_shores'), 'hg38')