mbiasplot: Methylation bias plot

Description Usage Arguments Value Examples

View source: R/mbiasPlot.R

Description

Plot the methylation at each position of the read to observe any biases in the methylation based on the read position

Usage

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mbiasplot(dir = NULL, mbiasFiles = NULL)

Arguments

dir

directory name with mbias files

mbiasFiles

list of mbias files

Value

Returns a list containing the methylation across the read position in original top and original bottom strand both in forward and reverse reads for multiple samples

Examples

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mbiasFile <- '2017-04-21_HG23KBCXY_2_AGGCAGAA_TATCTC_pe.M-bias.txt'
mbiasplot(mbiasFiles=system.file("extdata", mbiasFile, package='scmeth'))

scmeth documentation built on Nov. 8, 2020, 6:21 p.m.