bsConversionPlot | Bisulfite conversion rate visualization |
chromosomeCoverage | CpG covergae in each chromosome |
coverage | Coverage for single cells |
cpgDensity | Provides Coverage by the CpG density. CpG Density is defined... |
cpgDiscretization | Discretize the CpG methylation values to align with single... |
downsample | Downsample analysis |
featureCoverage | Coverage based on the genomic feature |
mbiasplot | Methylation bias plot |
methylationDist | Provide graphics for methylation distribution |
readmetrics | Provide graphics for read information |
repMask | Provides Coverage metrics in the repeat masker region |
report | Generates an inclusive report on methylation analysis |
scmeth | scmeth: a package to conduct quality control analysis for... |
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