API for seqplots
An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps
| Global functions | |
|---|---|
| .onAttach | Source code |
| MotifSetup | Man page |
| MotifSetup-class | Man page |
| PlotSetArray | Man page |
| PlotSetArray-class | Man page |
| PlotSetList | Man page |
| PlotSetList-class | Man page |
| PlotSetPair | Man page |
| PlotSetPair-class | Man page |
| [,PlotSetArray,ANY,missing,ANY-method | Man page |
| [,PlotSetArray,ANY,vector,ANY-method | Man page |
| [,PlotSetList,ANY,ANY,ANY-method | Man page |
| [[,PlotSetArray,ANY,ANY-method | Man page |
| [[,PlotSetList,ANY,ANY-method | Man page |
| add_local_file | Man page Source code |
| deployServerInstance | Man page Source code |
| getPlotSetArray | Man page Source code |
| getREF | Man page Source code |
| getSF | Source code |
| ggHeatmapPlotWrapper | Man page Source code |
| heatmapPlotWrapper | Man page Source code |
| imPlot2 | Man page |
| import.narrowPeak | Man page Source code |
| num2bp | Man page Source code |
| num2sci | Man page Source code |
| plot | Man page |
| plot,PlotSetArray,ANY-method | Man page |
| plot,PlotSetList,ANY-method | Man page |
| plot,PlotSetPair,ANY-method | Man page |
| plotAverage | Man page |
| plotAverage,PlotSetArray-method | Man page |
| plotAverage,PlotSetList-method | Man page |
| plotAverage,PlotSetPair-method | Man page |
| plotAverage,list-method | Man page |
| plotHeatmap | Man page |
| plotHeatmap,PlotSetArray-method | Man page |
| plotHeatmap,PlotSetList-method | Man page |
| plotHeatmap,PlotSetPair-method | Man page |
| plotHeatmap,list-method | Man page |
| plotMext | Man page Source code |
| run | Man page Source code |
| seqplots | Man page |
| seqplots-generic | Man page |
| seqplots-package | Man page |
