Files in seqplots
An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps

README.md
NEWS
DESCRIPTION
NAMESPACE
vignettes/QuickStart.Rmd vignettes/SeqPlotsGUI.Rmd R/deployServerInstance.R R/run.R R/plotAverage.R R/PlotSetList-class.R R/PlotSetArray-class.R R/int_plotMext.R R/MotifSetup-class.R R/seqplots-package.R R/int_getSF.R R/getPlotSetArray.R R/int_heatmapPlotWrapper.R R/helper_functions.R R/plotHeatmap.R R/zzz.R R/generic_methods.R R/int_ggHeatmapPlotWrapper.R R/PlotSetPair-class.R R/int_imPlot2.R
inst/CITATION
inst/extdocs/Logo.R inst/extdocs/pkgdown.R inst/extdocs/source_control.md
inst/doc/SeqPlotsGUI.html
inst/doc/SeqPlotsGUI.R inst/doc/SeqPlotsGUI.Rmd inst/doc/QuickStart.R
inst/doc/QuickStart.html
inst/doc/QuickStart.Rmd inst/seqplots/server_config.R inst/seqplots/server.R inst/seqplots/ui.R inst/seqplots/global.R
inst/seqplots/www/tutorial.html
inst/seqplots/www/biodalliance.html
inst/seqplots/www/outro.html
inst/seqplots/www/css/DT_bootstrap.css
inst/seqplots/www/css/TableTools.css
inst/seqplots/www/css/style.css
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inst/seqplots/www/css/font-awesome.min.css
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inst/seqplots/www/js/color.js
inst/seqplots/www/js/afterHTMLgridrender.js
inst/seqplots/www/js/pdf.worker.js
inst/seqplots/www/js/jquery.ba-throttle-debounce.js
inst/seqplots/www/js/tutorial.js
inst/seqplots/www/js/modal_events.js
inst/seqplots/www/js/jquery.cookie.js
inst/seqplots/www/js/jquery.lettering.js
inst/seqplots/www/js/actionbutton.js
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inst/seqplots/www/js/js_addons.js
inst/seqplots/www/js/tmpl.min.js
inst/seqplots/www/js/load_finished.js
inst/seqplots/www/js/DataTables/jquery.dataTables.js
inst/seqplots/www/js/DataTables/DT_filter.js
inst/seqplots/www/js/DataTables/DT_bootstrap.js
inst/seqplots/www/js/DataTables/dataTables.tableTools.min.js
inst/seqplots/www/help/Install_apps.md inst/seqplots/www/help/Legacy.md inst/seqplots/www/help/Home2.md
inst/seqplots/www/help/help.html
inst/seqplots/www/help/AdvOup.md inst/seqplots/www/help/QuickStart.md inst/seqplots/www/help/Install_server.md inst/seqplots/www/help/References.md inst/seqplots/www/help/Plotting.md
inst/seqplots/www/help/topbar.html
inst/seqplots/www/help/Home.md inst/seqplots/www/help/PlotSets.md
inst/seqplots/www/help/style.css
inst/seqplots/www/help/Install_R.md inst/seqplots/www/help/help.Rmd inst/seqplots/www/help/Heatmaps.md inst/seqplots/www/help/Errors.md inst/seqplots/www/help/Outputs.md
inst/seqplots/www/help/template2.html
inst/seqplots/www/help/Install_OSX.md inst/seqplots/www/help/Versions.md inst/seqplots/www/help/Batch.md inst/seqplots/www/help/Terms.md inst/seqplots/www/help/Files.md inst/seqplots/www/help/SaveAndLoad.md inst/seqplots/www/help/Genomes.md inst/seqplots/www/help/GUIplottingControls.md inst/seqplots/www/help/Install_Docker.md
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inst/seqplots/www/upload/upload.html
inst/seqplots/www/upload/css/jquery.fileupload-ui-noscript.css
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inst/seqplots/www/upload/css/jquery.fileupload-ui.css
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inst/seqplots/www/upload/js/vendor/jquery.ui.widget.js
inst/seqplots/www/upload/img/progressbar.gif
inst/seqplots/www/upload/img/loading.gif
inst/seqplots/functions/doFileOperations.R inst/seqplots/functions/renderHTMLgrid.R inst/seqplots/functions/mcDoParallel_plotting.R inst/seqplots/functions/mcCalcStart_calculations.R inst/seqplots/functions/LOCAL/mceval.R inst/seqplots/functions/LOCAL/server_plotLineplot.R inst/seqplots/functions/LOCAL/server_plotHeatmap.R inst/seqplots/ui/FileManagementModal.R
inst/seqplots/ui/DataTablesToolsSetup.js
inst/seqplots/ui/DataTablesColumnSetup.js
inst/seqplots/ui/loadModal.html
inst/extdata/Transcripts_ce10_chrI_100Kb.bed
inst/extdata/GSM1208360_chrI_100Kb_q5_sample.bw
inst/extdata/precalc_plotset.Rdata
inst/extdata/GSM1208361_chrI_100Kb_PeakCalls.bed
man/heatmapPlotWrapper.Rd man/num2sci.Rd man/run.Rd man/deployServerInstance.Rd man/plotHeatmap.Rd man/plotAverage.Rd man/seqplots-generic.Rd man/MotifSetup-class.Rd man/PlotSetArray-class.Rd man/PlotSetPair-class.Rd man/imPlot2.Rd man/PlotSetList-class.Rd man/seqplots.Rd man/plot.Rd man/ggHeatmapPlotWrapper.Rd man/plotMext.Rd man/num2bp.Rd man/getPlotSetArray.Rd tests/test-all.R tests/testthat/test1.R
build/vignette.rds
seqplots documentation built on Nov. 17, 2017, 12:31 p.m.