inst/seqplots/www/help/Batch.md

In seqplots: An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps

Batch operations

Controls to plot multiple plots at once are located on the Batch operation and setup tab, just below PDF paper options. It is possible to output the plots to multipage PDF, plot an array of plots on a single page (for average plots) or mix these options together.

The first drop-down controls the type of the plot - either average or heatmap. The second drop down determines the strategy to traverse the plot grid. The options include:

• single - every single feature-track pair will be plotted on separate plot
• rows - the plot grid will be traversed by rows, which means one plot that contains all tracks per feature will be prepared
• columns - the plot grid will be traversed by columns, which means one plot that contains all features per tracks will be prepared

The multi plot grid option controls how many plots will be placed on each page of the PDF output, e.g. 1x1 means one plot per one page, while 3x4 means 3 columns and 4 rows of plots. If number of plots exceeds the number of slots on page the new page will be added to the PDF.

Filter names will apply a filter to plot titles, which are based on on uploaded file names. For example, if you uploaded 100 files starting with a prefix of "my_experiment_", you can remove this fragment from each plot title and/or heatmap caption by putting this string in Filter names.

Finally, pressing Get PDF produces the final output file. Please see example below:

seqplots documentation built on Nov. 8, 2020, 4:52 p.m.