API for siggenes
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
| Global functions | |
|---|---|
| .onAttach | Source code |
| EBAM | Man page |
| EBAM-class | Man page |
| FindA0 | Man page |
| FindA0-class | Man page |
| Rfold.cal | Man page Source code |
| SAM | Man page |
| SAM-class | Man page |
| `args.ebam` | Source code |
| `args.finda0` | Source code |
| `checkA0` | Source code |
| `checkFUNout` | Source code |
| `checkInitialDelta` | Source code |
| `checkQuantiles` | Source code |
| `compFailureMat2` | Source code |
| `compFailureSubset` | Source code |
| `compFailure` | Source code |
| `compFalse` | Source code |
| `compNumber` | Source code |
| `compRatio` | Source code |
| `computeRS` | Source code |
| `ebam2excel` | Source code |
| `ebamA0` | Source code |
| `ebam` | Source code |
| `find.a0` | Source code |
| `findDelta` | Source code |
| `findFDR` | Source code |
| `findNumber` | Source code |
| `getFailure` | Source code |
| `getSuccesses` | Source code |
| `help.ebam` | Source code |
| `help.finda0` | Source code |
| `list.siggenes` | Source code |
| `makeA0mat` | Source code |
| `pi0.est2` | Source code |
| `pi0.est3` | Source code |
| `sam2excel` | Source code |
| `siggenes2excel` | Source code |
| `truncZ` | Source code |
| `z.ebam` | Source code |
| `z.find` | Source code |
| add.target2href | Man page Source code |
| adjust.for.mt | Man page Source code |
| args.ebam | Man page |
| args.finda0 | Man page |
| args.sam | Man page Source code |
| build.dperm | Man page Source code |
| cat.ebam | Man page Source code |
| cat.null | Man page |
| cat.null.approx | Man page |
| cat.null.approx2 | Man page Source code |
| cat.stat | Man page Source code |
| check.chipname | Man page Source code |
| checkA0 | Man page |
| checkDBs | Source code |
| checkFUNout | Man page |
| checkInitialDelta | Man page |
| checkQuantiles | Man page |
| chisq.ebam | Man page Source code |
| chisq.stat | Man page Source code |
| chisqClass | Man page |
| chisqClassSplitted | Man page Source code |
| chisqEbamMissing | Source code |
| chisqStatMissing | Source code |
| col2hex | Man page Source code |
| compFailABF | Source code |
| compFailFuzzy | Source code |
| compFailure | Man page |
| compFailureMat2 | Man page |
| compFailureSubset | Man page |
| compFalse | Man page |
| compNumber | Man page |
| compPermStat | Man page |
| compPermTrendStat | Source code |
| compRatio | Man page |
| computeContCols | Man page |
| computeRS | Man page |
| d.null | Man page Source code |
| d.stat | Man page Source code |
| delta.plot | Man page Source code |
| denspr | Man page Source code |
| ebam | Man page |
| ebam2excel | Man page |
| ebam2html | Man page Source code |
| ebamA0 | Man page |
| ebamControl | Man page Source code |
| find.a0 | Man page |
| find.a0Control | Man page Source code |
| findDelta | Man page |
| findFDR | Man page |
| findNumber | Man page |
| finda02html | Man page Source code |
| formatSAM | Man page Source code |
| fudge2 | Man page Source code |
| fuzzy.ebam | Man page Source code |
| fuzzy.null | Source code |
| fuzzy.null.abf | Source code |
| fuzzy.null.approx | Source code |
| fuzzy.stat | Man page Source code |
| getFailure | Man page |
| getQuantiles | Man page Source code |
| getSuccesses | Man page |
| getTD4Affy | Man page Source code |
| getTD4rs | Man page Source code |
| help.ebam | Man page |
| help.finda0 | Man page |
| help.sam | Man page Source code |
| identify,SAM-method | Man page |
| limma2ebam | Man page Source code |
| limma2sam | Man page Source code |
| lines.denspr | Source code |
| link.genes | Man page Source code |
| link.siggenes | Man page Source code |
| list.siggenes | Man page |
| make.tablecode | Man page Source code |
| makeA0mat | Man page |
| md.plot | Man page Source code |
| na.handling | Man page Source code |
| na.replace.cont | Man page Source code |
| nclass.wand | Man page Source code |
| pairt.cl.transform | Man page Source code |
| pairt.samp | Man page Source code |
| pairt.samp.transform | Man page Source code |
| pi0.est | Man page Source code |
| pi0.est2 | Man page |
| pi0.est3 | Man page |
| plot,EBAM,ANY-method | Man page |
| plot,EBAM-method | Man page |
| plot,FindA0,ANY-method | Man page |
| plot,FindA0-method | Man page |
| plot,SAM,ANY-method | Man page |
| plot,SAM-method | Man page |
| plot.denspr | Source code |
| plotArguments | Man page Source code |
| plotFindArguments | Man page Source code |
| plotLegendLines | Source code |
| pretty.mat.fdr | Man page Source code |
| pretty.mat.sig | Man page Source code |
| print,EBAM-method | Man page |
| print,FindA0-method | Man page |
| print,SAM-method | Man page |
| print,sumEBAM-method | Man page |
| print,sumSAM-method | Man page |
| quantiles | Man page Source code |
| qvalue.cal | Man page Source code |
| recodeLevel | Man page Source code |
| recodeVal | Man page Source code |
| rowRanksWilc | Man page Source code |
| rowWilcoxon | Man page Source code |
| sam | Man page Source code |
| sam.plot2 | Man page Source code |
| sam2excel | Man page |
| sam2html | Man page Source code |
| samControl | Man page Source code |
| setup.mat.samp | Man page Source code |
| setupMatSamp2 | Source code |
| show,EBAM-method | Man page |
| show,FindA0-method | Man page |
| show,SAM-method | Man page |
| show,sumEBAM-method | Man page |
| show,sumSAM-method | Man page |
| siggenes2excel | Man page |
| siggenes2html | Man page Source code |
| stats.cal | Man page Source code |
| sumEBAM-class | Man page |
| sumSAM-class | Man page |
| summary,EBAM-method | Man page |
| summary,SAM-method | Man page |
| trend.ebam | Man page Man page Source code |
| trend.ebam.data.frame | Man page Source code |
| trend.ebam.default | Man page Source code |
| trend.ebam.list | Man page Source code |
| trend.null | Source code |
| trend.stat | Man page Source code |
| trend.stat.data.frame | Man page Source code |
| trend.stat.default | Man page Source code |
| trend.stat.list | Man page Source code |
| truncZ | Man page |
| wilc.ebam | Man page Source code |
| wilc.stat | Man page Source code |
| z.ebam | Man page |
| z.find | Man page |
