Description Objects from the Class Slots Methods Author(s) See Also
These classes are just used for a nicer output of the summary of an object of class SAM or EBAM, respectively.
Objects can be created by calls of the form new("sumSAM", ...)
,
or by using the function summary(object)
when object is a
SAM-class object.
Objects can be created by calls of the form new("sumEBAM", ...)
,
or by using the function summary(object)
when object is an
EBAM-class object.
row.sig.genes
:Object of class "numeric"
consisting
of the row numbers of the significant genes in the data matrix.
mat.fdr
:Object of class "matrix"
containing general
information as the number of differentially expressed genes and the
estimated FDR for either one or several values of Delta.
mat.sig
:Object of class "data.frame"
containing gene-specific
statistics as the d-values (or z-values) and the q-values or (the local FDR)
of the differentially expressed genes.
list.args
:Object of class "list"
consisting of some of
the specified arguments of summary needed for internal use.
signature(x = "sumSAM")
: Prints the output of the SAM-specific
method summary.
signature(object = "sumSAM")
: Shows the output of the summary
of a SAM analysis.
signature(x = "sumEBAM")
: Prints the output of the EBAM-specific
method summary.
signature(object = "sumEBAM")
: Shows the output of the summary
of a EBAM analysis.
Holger Schwender, holger.schw@gmx.de
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