Files in siggenes
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
NAMESPACE
DESCRIPTION
build/vignette.rds
R/sumSAM-class.R
R/checkA0.R
R/compFalse.R
R/chisqClass.R
R/help.finda0.R
R/compFailureMat2.R
R/link.siggenes.R
R/compPermStat.R
R/finda02html.R
R/samControl.R
R/SAM-class.R
R/fudge2.R
R/help.ebam.R
R/cat.ebam.R
R/rowRanksWilc.R
R/checkDBs.R
R/plotFindArguments.R
R/na.handling.R
R/computeContCols.R
R/add.target2href.R
R/getTD4Affy.R
R/cat.stat.R
R/link.genes.R
R/getTD4rs.R
R/fuzzy.stat.R
R/EBAM-class.R
R/sumEBAM-class.R
R/chisq.stat.R
R/quantiles.R
R/args.sam.R
R/compFailureSubset.R
R/trend.stat.R
R/cat.null.approx.R
R/chisq.ebam.R
R/pairt.samp.transform.R
R/pi0.est3.R
R/compFailure.R
R/chisqClassSplitted.R
R/fuzzy.ebam.R
R/delta.plot.R
R/formatSAM.R
R/findDelta.R
R/denspr.R
R/plotArguments.R
R/checkQuantiles.R
R/d.null.R
R/findNumber.R
R/nclass.wand.R
R/cat.null.approx2.R
R/cat.null.R
R/compRatio.R
R/make.tablecode.R
R/pairt.samp.R
R/sam.R
R/find.a0.R
R/checkInitialDelta.R
R/zzz.R
R/na.replace.cont.R
R/args.ebam.R
R/getSuccesses.R
R/computeRS.R
R/siggenes2html.R
R/recodeVal.R
R/args.finda0.R
R/ebamA0.R
R/stats.cal.R
R/z.ebam.R
R/makeA0mat.R
R/sam2excel.R
R/pairt.cl.transform.R
R/col2hex.R
R/sam2html.R
R/pi0.est.R
R/list.siggenes.R
R/help.sam.R
R/Rfold.cal.R
R/compNumber.R
R/adjust.for.mt.R
R/md.plot.R
R/pi0.est2.R
R/getFailure.R
R/ebam.R
R/build.dperm.R
R/ebam2excel.R
R/setup.mat.samp.R
R/wilc.stat.R
R/FindA0-class.R
R/wilc.ebam.R
R/sam.plot2.R
R/truncZ.R
R/z.find.R
R/getQuantiles.R
R/d.stat.R
R/rowWilcoxon.R
R/ebam2html.R
R/qvalue.cal.R
R/siggenes2excel.R
R/check.chipname.R
R/findFDR.R
R/trend.ebam.R
R/checkFUNout.R
R/limma2sam.R
vignettes/finda0.png
vignettes/ebamplot.eps
vignettes/samplot.ps
vignettes/finda0.eps
vignettes/siggenes.Rnw
vignettes/samplot.png
vignettes/ebamplot.png
man/SAM-class.Rd
man/findDelta.Rd
man/chisq.stat.Rd
man/fuzzy.ebam.Rd
man/FindA0-class.Rd
man/sam.plot2.Rd
man/sumSAM-class.Rd
man/fudge2.Rd
man/wilc.stat.Rd
man/z.ebam.Rd
man/d.stat.Rd
man/link.siggenes.Rd
man/delta.plot.Rd
man/find.a0.Rd
man/ebamControl.Rd
man/trend.stat.Rd
man/plotFindArguments.Rd
man/limma2sam.Rd
man/siggenes2html.Rd
man/wilc.ebam.Rd
man/md.plot.Rd
man/plotArguments.Rd
man/qvalue.cal.Rd
man/sam.Rd
man/ebam.Rd
man/trend.ebam.Rd
man/nclass.wand.Rd
man/EBAM-class.Rd
man/help.ebam.Rd
man/pi0.est.Rd
man/siggenes2excel.Rd
man/rowWilcoxon.Rd
man/link.genes.Rd
man/list.siggenes.Rd
man/samControl.Rd
man/chisq.ebam.Rd
man/siggenes-internal.Rd
man/help.sam.Rd
man/denspr.Rd
man/help.finda0.Rd
inst/doc/plot.sam.html
inst/doc/siggenes.R
inst/doc/plot.finda0.html
inst/doc/siggenes.pdf
inst/doc/identify.sam.html
inst/doc/summary.sam.html
inst/doc/siggenes.Rnw
inst/doc/print.sam.html
inst/doc/print.finda0.html
inst/doc/siggenesRnews.pdf
inst/doc/print.ebam.html
inst/doc/plot.ebam.html
inst/doc/summary.ebam.html
