Files in siggenes

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

R/sumSAM-class.R R/checkA0.R R/compFalse.R R/chisqClass.R R/help.finda0.R R/compFailureMat2.R R/link.siggenes.R R/compPermStat.R R/finda02html.R R/samControl.R R/SAM-class.R R/fudge2.R R/help.ebam.R R/cat.ebam.R R/rowRanksWilc.R R/checkDBs.R R/plotFindArguments.R R/na.handling.R R/computeContCols.R R/add.target2href.R R/getTD4Affy.R R/cat.stat.R R/link.genes.R R/getTD4rs.R R/fuzzy.stat.R R/EBAM-class.R R/sumEBAM-class.R R/chisq.stat.R R/quantiles.R R/args.sam.R R/compFailureSubset.R R/trend.stat.R R/cat.null.approx.R R/chisq.ebam.R R/pairt.samp.transform.R R/pi0.est3.R R/compFailure.R R/chisqClassSplitted.R R/fuzzy.ebam.R R/delta.plot.R R/formatSAM.R R/findDelta.R R/denspr.R R/plotArguments.R R/checkQuantiles.R R/d.null.R R/findNumber.R R/nclass.wand.R R/cat.null.approx2.R R/cat.null.R R/compRatio.R R/make.tablecode.R R/pairt.samp.R R/sam.R R/find.a0.R R/checkInitialDelta.R R/zzz.R R/na.replace.cont.R R/args.ebam.R R/getSuccesses.R R/computeRS.R R/siggenes2html.R R/recodeVal.R R/args.finda0.R R/ebamA0.R R/stats.cal.R R/z.ebam.R R/makeA0mat.R R/sam2excel.R R/pairt.cl.transform.R R/col2hex.R R/sam2html.R R/pi0.est.R R/list.siggenes.R R/help.sam.R R/Rfold.cal.R R/compNumber.R R/adjust.for.mt.R R/md.plot.R R/pi0.est2.R R/getFailure.R R/ebam.R R/build.dperm.R R/ebam2excel.R R/setup.mat.samp.R R/wilc.stat.R R/FindA0-class.R R/wilc.ebam.R R/sam.plot2.R R/truncZ.R R/z.find.R R/getQuantiles.R R/d.stat.R R/rowWilcoxon.R R/ebam2html.R R/qvalue.cal.R R/siggenes2excel.R R/check.chipname.R R/findFDR.R R/trend.ebam.R R/checkFUNout.R R/limma2sam.R man/SAM-class.Rd man/findDelta.Rd man/chisq.stat.Rd man/fuzzy.ebam.Rd man/FindA0-class.Rd man/sam.plot2.Rd man/sumSAM-class.Rd man/fudge2.Rd man/wilc.stat.Rd man/z.ebam.Rd man/d.stat.Rd man/link.siggenes.Rd man/delta.plot.Rd man/find.a0.Rd man/ebamControl.Rd man/trend.stat.Rd man/plotFindArguments.Rd man/limma2sam.Rd man/siggenes2html.Rd man/wilc.ebam.Rd man/md.plot.Rd man/plotArguments.Rd man/qvalue.cal.Rd man/sam.Rd man/ebam.Rd man/trend.ebam.Rd man/nclass.wand.Rd man/EBAM-class.Rd man/help.ebam.Rd man/pi0.est.Rd man/siggenes2excel.Rd man/rowWilcoxon.Rd man/link.genes.Rd man/list.siggenes.Rd man/samControl.Rd man/chisq.ebam.Rd man/siggenes-internal.Rd man/help.sam.Rd man/denspr.Rd man/help.finda0.Rd inst/doc/siggenes.R inst/doc/siggenes.pdf inst/doc/siggenesRnews.pdf