chisq.ebam | EBAM Analysis for Categorical Data |
chisq.stat | SAM Analysis for Categorical Data |
delta.plot | Delta Plots |
denspr | Density Estimation |
d.stat | SAM Analysis Using a Modified t-statistic |
ebam | Empirical Bayes Analysis of Microarrays |
EBAM-class | Class EBAM |
ebamControl | Further EBAM Arguments |
find.a0 | Computation of the Fudge Factor |
FindA0-class | Class FindA0 |
findDelta | Finding the Threshold Delta |
fudge2 | Fudge Factor |
fuzzy.ebam | EBAM and SAM for Fuzzy Genotype Calls |
help.ebam | Help files or argument list for EBAM-specific methods |
help.finda0 | Help files or argument list for FindA0-specific methods |
help.sam | Help files or argument list for SAM-specific methods |
limma2sam | limma to SAM or EBAM |
link.genes | Links for a list of genes |
link.siggenes | Links for a SAM or an EBAM object |
list.siggenes | List of the significant genes |
md.plot | MD Plot |
nclass.wand | Number of cells in a histogram |
pi0.est | Estimation of the prior probability |
plotArguments | Plot Arguments |
plotFindArguments | Plot Arguments |
qvalue.cal | Computation of the q-value |
rowWilcoxon | Rowwise Wilcoxon Rank Sum Statistics |
sam | Significance Analysis of Microarray |
SAM-class | Class SAM |
samControl | Further SAM Arguments |
sam.plot2 | SAM Plot |
siggenes2excel | CSV file of a SAM or an EBAM object |
siggenes2html | HTML page for a SAM or an EBAM object |
siggenes-internal | Internal siggenes functions |
sumSAM-class | Classes sumSAM and sumEBAM |
trend.ebam | EBAM Analysis of Linear Trend |
trend.stat | SAM Analysis of Linear Trend |
wilc.ebam | EBAM Analysis Using Wilcoxon Rank Statistics |
wilc.stat | SAM Analysis Using Wilcoxon Rank Statistics |
z.ebam | EBAM analysis Using t- or F-test |
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