simulatorZ: Simulator for Collections of Independent Genomic Data Sets

simulatorZ is a package intended primarily to simulate collections of independent genomic data sets, as well as performing training and validation with predicting algorithms. It supports ExpressionSet and RangedSummarizedExperiment objects.

Author
Yuqing Zhang, Christoph Bernau, Levi Waldron
Date of publication
None
Maintainer
Yuqing Zhang <zhangyuqing.pkusms@gmail.com>
License
Artistic-2.0
Version
1.8.0
URLs

View on Bioconductor

Man pages

cvSubsets
cvSubsets
funCV
funCV
geneFilter
geneFilter
getTrueModel
getTrueModel
masomenos
masomenos
plusMinus
plusMinus
rowCoxTests
rowCoxTests
simBootstrap
simBootstrap
simData
simData
simTime
simTime
simulatorZ-package
Simulator for Collections of Independent Genomic Data Sets
zmatrix
zmatrix

Files in this package

simulatorZ/DESCRIPTION
simulatorZ/NAMESPACE
simulatorZ/R
simulatorZ/R/00utils.R
simulatorZ/R/cvSubsets.R
simulatorZ/R/funCV.R
simulatorZ/R/geneFilter.R
simulatorZ/R/getTrueModel.R
simulatorZ/R/masomenos.R
simulatorZ/R/plusminuscore.R
simulatorZ/R/rowCoxTest.R
simulatorZ/R/simBootstrap.R
simulatorZ/R/simData.R
simulatorZ/R/simTime.R
simulatorZ/R/zmatrix.R
simulatorZ/build
simulatorZ/build/vignette.rds
simulatorZ/inst
simulatorZ/inst/NEWS
simulatorZ/inst/doc
simulatorZ/inst/doc/simulatorZ-vignette.R
simulatorZ/inst/doc/simulatorZ-vignette.Rnw
simulatorZ/inst/doc/simulatorZ-vignette.pdf
simulatorZ/inst/unitTests
simulatorZ/inst/unitTests/test_simData.R
simulatorZ/man
simulatorZ/man/cvSubsets.Rd
simulatorZ/man/funCV.Rd
simulatorZ/man/geneFilter.Rd
simulatorZ/man/getTrueModel.Rd
simulatorZ/man/masomenos.Rd
simulatorZ/man/plusMinus.Rd
simulatorZ/man/rowCoxTests.Rd
simulatorZ/man/simBootstrap.Rd
simulatorZ/man/simData.Rd
simulatorZ/man/simTime.Rd
simulatorZ/man/simulatorZ-package.Rd
simulatorZ/man/zmatrix.Rd
simulatorZ/src
simulatorZ/src/coxformatrices.cpp
simulatorZ/src/survS.h
simulatorZ/src/survproto.h
simulatorZ/tests
simulatorZ/tests/runTests.R
simulatorZ/vignettes
simulatorZ/vignettes/simulatorZ-vignette.Rnw
simulatorZ/vignettes/simulatorZ-vignette.bib