Provides functions for inferring continuous, branching lineage structures in low-dimensional data. Slingshot was designed to model developmental trajectories in single-cell RNA sequencing data and serve as a component in an analysis pipeline after dimensionality reduction and clustering. It is flexible enough to handle arbitrarily many branching events and allows for the incorporation of prior knowledge through supervised graph construction.
|Author||Kelly Street [aut, cre, cph], Davide Risso [aut], Diya Das [aut], Sandrine Dudoit [ths], Koen Van den Berge [ctb], Robrecht Cannoodt [ctb]|
|Bioconductor views||Clustering DifferentialExpression GeneExpression RNASeq Sequencing SingleCell Software Transcriptomics Visualization|
|Maintainer||Kelly Street <[email protected]>|
|Package repository||View on Bioconductor|
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