slingClusterLabels: Extract cluster labels used by Slingshot
In slingshot: Tools for ordering single-cell sequencing
Description
Usage
Arguments
Value
Methods (by class)
Examples
Description
Extract the cluster labels used by slingshot.
Usage
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slingClusterLabels(x)
## S4 method for signature 'SlingshotDataSet'
slingClusterLabels(x)
## S4 method for signature 'SingleCellExperiment'
slingClusterLabels(x)
Arguments
x
an object containing slingshot output.
Value
a vector of cluster labels or a matrix of cluster assignment weights.
Methods (by class)
-
SlingshotDataSet: returns the cluster labels stored in a
SlingshotDataSet object.
-
SingleCellExperiment: returns the cluster labels used by
slingshot in a SingleCellExperiment object.
Examples
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data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
sds <- getLineages(rd, cl)
slingClusterLabels(sds)
slingshot documentation built on Nov. 8, 2020, 5:51 p.m.
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Description Usage Arguments Value Methods (by class) Examples
Description
Extract the cluster labels used by slingshot.
Usage
1 2 3 4 5 6 7 | slingClusterLabels(x)
## S4 method for signature 'SlingshotDataSet'
slingClusterLabels(x)
## S4 method for signature 'SingleCellExperiment'
slingClusterLabels(x)
|
Arguments
x |
an object containing |
Value
a vector of cluster labels or a matrix of cluster assignment weights.
Methods (by class)
-
SlingshotDataSet: returns the cluster labels stored in aSlingshotDataSetobject. -
SingleCellExperiment: returns the cluster labels used byslingshotin aSingleCellExperimentobject.
Examples
1 2 3 4 5 | data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
sds <- getLineages(rd, cl)
slingClusterLabels(sds)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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