Man pages for slingshot
Tools for ordering single-cell sequencing

embedCurvesEmbed trajectory in new space
getCurvesConstruct Smooth Lineage Curves
getLineagesInfer Lineage Structure from Clustered Samples
newSlingshotDataSetInitialize an object of class 'SlingshotDataSet'
pairs-SlingshotDataSetPairs plot of Slingshot output
plot3d-SlingshotDataSetPlot Slingshot output in 3D
plotGenePseudotimePlot Gene Expression by Pseudotime
plot-SlingshotDataSetPlot Slingshot output
predict.SlingshotDataSetPredict from a Slingshot model
slingAdjacencyExtract Slingshot adjacency matrix
slingBranchGraphConstruct graph of slingshot branch labels
slingBranchIDGet slingshot branch labels
slingClusterLabelsExtract cluster labels used by Slingshot
slingCurvesExtract simultaneous principal curves
slingLineagesExtract the Slingshot lineages
slingParamsMethods for parameters used by Slingshot
slingPseudotimeGet Slingshot pseudotime values
slingshotPerform lineage inference with Slingshot
SlingshotDataSetExtract Slingshot output
SlingshotDataSet-classClass 'SlingshotDataSet'
slingshotExampleBifurcating lineages data
slingshot documentation built on Nov. 8, 2020, 5:51 p.m.