slingAdjacency: Extract Slingshot adjacency matrix

Description Usage Arguments Value Methods (by class) Examples

Description

Extract the adjacency matrix from an object containing slingshot output.

Usage

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slingAdjacency(x)

## S4 method for signature 'SlingshotDataSet'
slingAdjacency(x)

## S4 method for signature 'SingleCellExperiment'
slingAdjacency(x)

Arguments

x

an object containing slingshot output.

Value

the matrix of connections between clusters, inferred by the MST.

Methods (by class)

Examples

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data("slingshotExample")
sds <- getLineages(rd, cl)
slingAdjacency(sds)

slingshot documentation built on Nov. 1, 2018, 3 a.m.