tSNE_scatter: Feature boxplot

In structToolbox: Data processing & analysis tools for Metabolomics and other omics

Description

plots the new representation of data after applying tSNE.

Usage

tSNE_scatter(factor_name, ...)

Arguments

factor_name	(character) The name of a sample-meta column to use.
...	Additional slots and values passed to struct_class.

Details

This object makes use of functionality from the following packages:

• Rtsne

Value

A tSNE_scatter object.

References

van der Maaten L, Hinton G (2008). “Visualizing High-Dimensional Data Using t-SNE.” Journal of Machine Learning Research, 9, 2579-2605.

van der Maaten L (2014). “Accelerating t-SNE using Tree-Based Algorithms.” Journal of Machine Learning Research, 15, 3221-3245.

Krijthe JH (2015). Rtsne: T-Distributed Stochastic Neighbor Embedding using Barnes-Hut Implementation. R package version 0.15, https://github.com/jkrijthe/Rtsne.

Examples

M = tSNE_scatter(factor_name='Species')

structToolbox documentation built on Nov. 8, 2020, 6:54 p.m.