Files in structToolbox
Data processing & analysis tools for Metabolomics and other omics
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
R/nroot_transform_class.R
R/fold_change_int_class.R
R/run_doc.R
R/model_apply_doc.R
R/HSDEM_class.R
R/model_train_doc.R
R/rsd_filter.R
R/ttest_class.R
R/fisher_exact_class.R
R/kfold_xval_class.R
R/mixed_effect_class.R
R/blank_filter_class.R
R/sysdata.rda
R/mv_feature_filter_class.R
R/calculate_doc.R
R/forward_selection_by_rank_class.R
R/tSNE_class.R
R/split_data_class.R
R/paretoscale_class.R
R/chart_plot_doc.R
R/bootstrap_class.R
R/permutation_test_class.R
R/fold_change_class.R
R/factor_barchart_class.R
R/knn_impute_class.R
R/wilcox_test_class.R
R/confounders_clsq_class.R
R/d_ratio_filter_class.R
R/log_transform.R
R/MTBLS79_dataset_class.R
R/AUC_metric_class.R
R/PLSR_class.R
R/mv_sample_filter_class.R
R/permute_sample_order_class.R
R/kw_rank_sum_class.R
R/glog_class.R
R/filter_na_count.R
R/model_predict_doc.R
R/stratified_split_class.R
R/grid_search_1d_class.R
R/svm_classifier_class.R
R/balanced_accuracy_class.R
R/hca_class.R
R/pqn_norm_method_class.R
R/zzz.R
R/pairs_filter_class.R
R/DFA_class.R
R/entity_objects.R
R/linear_model_class.R
R/filter_smeta_class.R
R/sb_corr.R
R/PLSDA_charts.R
R/dataset_chart_classes.R
R/PCA_plotfcns.R
R/mean_of_medians.R
R/PCA_class.R
R/anova_class.R
R/filter_by_name_class.R
R/feature_profile_class.R
R/constant_sum_norm_class.R
R/r_squared_class.R
R/ggplot_theme_pub.R
R/vec_norm_class.R
R/kfold_xval_charts.R
R/autoscale_class.R
R/classical_lsq_class.R
R/PLSDA_class.R
R/mean_centre_class.R
R/HSD_class.R
R/model_reverse_doc.R
R/corr_coef_class.R
R/as_data_frame_doc.R
R/prop_na_class.R
R/structToolbox.R
vignettes/data_analysis_omics_using_the_structtoolbox.Rmd
man/AUC.Rd
man/DFA.Rd
man/stratified_split.Rd
man/plsr_qq_plot.Rd
man/confounders_lsq_barchart.Rd
man/pca_dstat_plot.Rd
man/tSNE_scatter.Rd
man/mv_sample_filter_hist.Rd
man/mv_histogram.Rd
man/pca_scores_plot.Rd
man/DatasetExperiment_dist.Rd
man/split_data.Rd
man/dfa_scores_plot.Rd
man/fold_change_plot.Rd
man/blank_filter_hist.Rd
man/mv_feature_filter.Rd
man/ANOVA.Rd
man/model_reverse.Rd
man/balanced_accuracy.Rd
man/DatasetExperiment_boxplot.Rd
man/plsda_predicted_plot.Rd
man/glog_transform.Rd
man/prop_na.Rd
man/confounders_clsq.Rd
man/HSD.Rd
man/model_predict.Rd
man/mean_centre.Rd
man/pca_loadings_plot.Rd
man/fs_line.Rd
man/kfold_xval.Rd
man/plsr_cook_dist.Rd
man/feature_boxplot.Rd
man/svm_plot_2d.Rd
man/corr_coef.Rd
man/plsr_residual_hist.Rd
man/plsda_roc_plot.Rd
man/bootstrap.Rd
man/wilcox_p_hist.Rd
man/forward_selection_by_rank.Rd
man/feature_profile.Rd
man/plsda_regcoeff_plot.Rd
man/as_data_frame.Rd
man/r_squared.Rd
man/mv_boxplot.Rd
man/mv_sample_filter.Rd
man/pca_biplot.Rd
man/mv_feature_filter_hist.Rd
man/rsd_filter_hist.Rd
man/filter_smeta.Rd
man/HSDEM.Rd
man/dratio_filter.Rd
man/kfoldxcv_grid.Rd
man/plsda_vip_plot.Rd
man/log_transform.Rd
man/pca_scree_plot.Rd
man/kw_p_hist.Rd
man/DatasetExperiment_heatmap.Rd
man/HCA.Rd
man/nroot_transform.Rd
man/pca_correlation_plot.Rd
man/hca_dendrogram.Rd
man/sb_corr.Rd
man/compare_dist.Rd
man/knn_impute.Rd
man/grid_search_1d.Rd
man/blank_filter.Rd
man/fisher_exact.Rd
man/structToolbox.Rd
man/chart_plot.Rd
man/plsda_scores_plot.Rd
man/pairs_filter.Rd
man/constant_sum_norm.Rd
man/PLSR.Rd
man/plsr_prediction_plot.Rd
man/PCA.Rd
man/glog_opt_plot.Rd
man/permutation_test_plot.Rd
man/rsd_filter.Rd
man/fold_change.Rd
man/SVM.Rd
man/linear_model.Rd
man/classical_lsq.Rd
man/ttest.Rd
man/filter_by_name.Rd
man/pqn_norm.Rd
man/model_train.Rd
man/MTBLS79_DatasetExperiment.Rd
man/DatasetExperiment_factor_boxplot.Rd
man/PLSDA.Rd
man/vec_norm.Rd
man/mixed_effect.Rd
man/wilcox_test.Rd
man/autoscale.Rd
man/permutation_test.Rd
man/kfoldxcv_metric.Rd
man/permute_sample_order.Rd
man/pareto_scale.Rd
man/fold_change_int.Rd
man/calculate.Rd
man/confounders_lsq_boxplot.Rd
man/filter_na_count.Rd
man/pqn_norm_hist.Rd
man/kw_rank_sum.Rd
man/gs_line.Rd
man/run.Rd
man/model_apply.Rd
man/mean_of_medians.Rd
man/tSNE.Rd
tests/testthat.R
tests/testthat/test-kfold-xval.R
tests/testthat/test-gridsearch1d.R
tests/testthat/test-mixed-effects.R
tests/testthat/test-filter-smeta.R
tests/testthat/test-permutation_test.R
tests/testthat/test-knn-impute.R
tests/testthat/test-prop-na.R
tests/testthat/test-pqn-norm.R
tests/testthat/test-mv-sample-filter.R
tests/testthat/test-mv-feature-filter.R
tests/testthat/test-log-transform.R
tests/testthat/test-blank-filter.R
tests/testthat/test-autoscale.R
tests/testthat/test-split-data.R
tests/testthat/test-factor-barchart.R
tests/testthat/test-rsd-filter.R
tests/testthat/test-vec-norm.R
tests/testthat/test-plsda.R
tests/testthat/test-ttest.R
tests/testthat/test-pca.R
tests/testthat/test-glog.R
tests/testthat/test-dataset-charts.R
tests/testthat/test-fisher-exact.R
tests/testthat/test-filter-by-name.R
tests/testthat/test-plsr.R
tests/testthat/test-permute-sample-order.R
tests/testthat/test-confounders-lsq.R
tests/testthat/test-anova.R
inst/doc/data_analysis_omics_using_the_structtoolbox.R
inst/doc/data_analysis_omics_using_the_structtoolbox.html
inst/doc/data_analysis_omics_using_the_structtoolbox.Rmd
