plotProfile: Gene Temporal Profile Plot
In timecourse: Statistical Analysis for Developmental Microarray Time Course Data

Description Usage Arguments Details Author(s)

Plots the longitudinal temporal profile of a gene.

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plotProfile(object, stats=c("HotellingT2", "MB"), ranking=1, gid=NULL, gnames=NULL, desc=NULL,
type=c("p","l","b"), col=2:100, lty=1:100, pch=1:100, lwd=2, xlab="Time",
ylab="Expression", legloc=NULL, xlim=NULL, ylim=NULL, cex.main=1,...)

`object`	a `MArrayTC` object.
`stats`	a character indicating which statistic the `ranking` is based on.
`ranking`	a numeric value giving the ranking of the gene to be plotted.
`gid`	an optional character giving the ID of the gene to be plotted.
`gnames`	an optional character vector with the i_th element corresponds to the gene ID of the i_th gene in `object$M`.
`desc`	an optional character vector with the i_th element corresponds to the gene description of the i_th gene in `object$M`.
`type`	a character indicating the plot type, `"p"` for points, `"l"` for lines, and `"b"` for both.
`col`	a character or numeric vector giving the colors for different biological conditions. Default is `2:100`.
`lty`	a character or numeric vector giving the line types for different replicates. Default is `1:100`.
`pch`	a character or numeric vector giving the point types for different replicates. Default is `1:100`.
`lwd`	optional. The default sets to 2.
`xlab`	character. The label for the x-axis.
`ylab`	character. The label for the y-axis.
`legloc`	an optional vector giving the location of the legend.
`xlim`	an optional vector giving the upper- and lower- limits of x-axis.
`ylim`	an optional vector giving the upper- and lower- limits of y-axis.
`cex.main`	optional. The default sets to 1
`...`	any other arguments passed onto `plot`

This function takes an object of MArrayTC as the input and plots the temporal profile of a single gene. The user can specify either the ranking based on stats or the gene ID of the gene to be plotted.

See points for possible values for pch, col and cex.

See mb.long for examples.

Yu Chuan Tai yuchuan@stat.berkeley.edu

timecourse documentation built on Nov. 8, 2020, 8:04 p.m.