API for transcriptogramer
Transcriptional analysis based on transcriptograms
| Global functions | |
|---|---|
| DE | Man page |
| DE,Transcriptogram-method | Man page |
| DE-method | Man page |
| DEsymbols | Man page |
| GPL570 | Man page |
| GSE9988 | Man page |
| Hs700 | Man page |
| Hs800 | Man page |
| Hs900 | Man page |
| HsBPTerms | Man page |
| Mm700 | Man page |
| Mm800 | Man page |
| Mm900 | Man page |
| Rn700 | Man page |
| Rn800 | Man page |
| Rn900 | Man page |
| Sc700 | Man page |
| Sc800 | Man page |
| Sc900 | Man page |
| Terms | Man page |
| Terms,Transcriptogram-method | Man page |
| Terms-method | Man page |
| Transcriptogram-class | Man page |
| assignExpression | Source code |
| association | Man page |
| associationCheck | Source code |
| check_adjustMethod1 | Source code |
| check_adjustMethod2 | Source code |
| check_algorithm | Source code |
| check_alpha | Source code |
| check_association | Source code |
| check_boundaryConditions | Source code |
| check_colors | Source code |
| check_connected | Source code |
| check_dictionary | Source code |
| check_expression | Source code |
| check_host | Source code |
| check_levels | Source code |
| check_maincomp | Source code |
| check_nCores | Source code |
| check_nTerms | Source code |
| check_onlyGenesInDE | Source code |
| check_ontology | Source code |
| check_ordering | Source code |
| check_pValue | Source code |
| check_port | Source code |
| check_radius | Source code |
| check_species1 | Source code |
| check_species2 | Source code |
| check_statistic | Source code |
| check_title | Source code |
| check_trend | Source code |
| check_universe | Source code |
| clusterEnrichment | Man page |
| clusterEnrichment,Transcriptogram-method | Man page |
| clusterEnrichment-method | Man page |
| clusterVisualization | Man page |
| clusterVisualization,Transcriptogram-method | Man page |
| clusterVisualization-method | Man page |
| connectivityProperties | Man page |
| connectivityProperties,Transcriptogram-method | Man page |
| connectivityProperties-method | Man page |
| dictionaryCheck | Source code |
| differentiallyExpressed | Man page |
| differentiallyExpressed,Transcriptogram-method | Man page |
| differentiallyExpressed-method | Man page |
| enrichmentPlot | Man page |
| enrichmentPlot,Transcriptogram-method | Man page |
| enrichmentPlot-method | Man page |
| error | Source code |
| orderingCheck | Source code |
| orderingProperties | Man page |
| orderingProperties,Transcriptogram-method | Man page |
| orderingProperties-method | Man page |
| radius | Man page |
| radius,Transcriptogram-method | Man page |
| radius-method | Man page |
| radius<- | Man page |
| radius<-,Transcriptogram-method | Man page |
| species1Check | Source code |
| species2Check | Source code |
| transcriptogramPreprocess | Man page Source code |
| transcriptogramStep1 | Man page |
| transcriptogramStep1,Transcriptogram-method | Man page |
| transcriptogramStep1-method | Man page |
| transcriptogramStep2 | Man page |
| transcriptogramStep2,Transcriptogram-method | Man page |
| transcriptogramStep2-method | Man page |
| transcriptogramer | Man page |
| transcriptogramer-package | Man page |
