trena
Fit transcriptional regulatory networks using gene expression, priors, machine learning

Package index
Search the trena package
Vignettes
Functions
218
Source code
78
Man pages
88
Home
/
Bioconductor
/
trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning

trena: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Methods for reconstructing transcriptional regulatory networks, especially in species for which genome-wide TF binding site information is available.

Getting started

Package overview README.md A Brief Introduction to TReNA An example Knitr/R Markdown document Case Study Four: a novel regulator of GATA2 in erythropoieis? Case Study One: attempt to reproduce known regulation of NFE2 by GATA1 in bulk RNA-seq Case Study Three attempt to reproduce known regulation of NFE2 by GATA1 in bulk RNA-seq Case Study Two reproduces known regulation of NFE2 by GATA1 in erytrhopoiesis RNA-seq Knitr/R Markdown: explore output controls TRENA: computational prediction of gene regulation

Browse package contents

Vignettes Man pages API and functions Files

Package details
AuthorSeth Ament <seth.ament@systemsbiology.org>, Paul Shannon <pshannon@systemsbioloyg.org>, Matthew Richards <mrichard@systemsbiology.org>
Bioconductor views FeatureExtraction GeneExpression GeneRegulation NetworkInference Regression SystemsBiology Transcription
MaintainerPaul Shannon <paul.thurmond.shannon@gmail.com>
LicenseGPL-3
Version1.12.1
URL https://pricelab.github.io/trena/ 
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("trena")

Try the trena package in your browser

Any scripts or data that you put into this service are public.

trena documentation built on Nov. 15, 2020, 2:07 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close