API for twoddpcr
Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules

Global functions
.ddpcrPlate Man page
.ddpcrWell Man page
KRAScounts Man page
KRAScountsQS Man page
KRAScountsWellCol Man page
KRASdata Man page
allPlot Man page
amplitudes Man page
amplitudes,ddpcrPlate-method Man page
amplitudes,ddpcrWell-method Man page
basicsSummary Man page Source code
castSummary Man page Source code
classCov Man page Source code
classMeans Man page Source code
classStats Man page Source code
classifyDfOnChannel Source code
classifyOnChannel Source code
classwiseMahalanobisRain Source code
clusterCenters Man page
clusterCentres Man page
clusterCentres,ddpcrPlate-method Man page
clusterCentres,ddpcrWell-method Man page
combinedCenters Man page
combinedCentres Man page
combinedCentres,ddpcrPlate-method Man page
combinedPlateCenters Man page
combinedPlateCentres Man page
commonClassificationMethod Man page
commonClassificationMethod,ddpcrPlate-method Man page
copiesSummary Man page Source code
cov Source code
ddpcr Man page
ddpcrPlate Man page
ddpcrPlate,character-method Man page
ddpcrPlate,ddpcrPlate-method Man page
ddpcrPlate,list-method Man page
ddpcrPlate,missing-method Man page
ddpcrPlate-class Man page
ddpcrWell Man page
ddpcrWell,character-method Man page
ddpcrWell,data.frame-method Man page
ddpcrWell,ddpcrWell-method Man page
ddpcrWell,missing-method Man page
ddpcrWell-class Man page
densityPlot Man page
dependentCols Source code
drawBlank Man page Source code
dropletPlot Man page Source code
dropletPlot,data.frame-method Man page
dropletPlot,ddpcrPlate-method Man page
dropletPlot,ddpcrWell-method Man page
dropletPlot.gg Source code
elementType,SimpleList-method Man page
essentialDependentCols Source code
exportTable Man page
exportTable,data.frame-method Man page
exportTable,ddpcrPlate-method Man page
exportTable,ddpcrWell-method Man page
exportZip Man page
exportZip,ddpcrPlate-method Man page
extractPlateName Man page Source code
extractWellNames Man page Source code Source code
facetPlot Man page
facetPlot,data.frame-method Man page
facetPlot,ddpcrPlate-method Man page
flatPlot Man page Source code
flatPlot,data.frame-method Man page
flatPlot,ddpcrPlate-method Man page
flatPlot,ddpcrWell-method Man page
fullCopiesSummary Man page Source code
fullCountsSummary Man page Source code
getAllSummary Source code
getChannelCentres Source code
getClassificationData Source code
getCutOff Man page Source code
getMutCopies Source code
getWellNames Source code
getWtCopies Source code
ggplot.multiwell Man page
ggplot.plate Man page Man page
ggplot.plate,ddpcrPlate-method Man page
ggplot.well Man page
ggplot.well,ddpcrWell-method Man page
ggplot.wells Man page
gridClassify Man page
gridClassify,data.frame-method Man page
gridClassify,ddpcrPlate-method Man page
gridClassify,ddpcrWell-method Man page
heatPlot Man page Man page Source code
heatPlot,data.frame-method Man page
heatPlot,ddpcrPlate-method Man page
heatPlot,ddpcrWell-method Man page
heatPlot.gg Source code
isEmpty,ddpcrPlate-method Man page
isEmpty,ddpcrWell-method Man page
kmeansClassify Man page
kmeansClassify,data.frame-method Man page
kmeansClassify,ddpcrPlate-method Man page
kmeansClassify,ddpcrWell-method Man page
knnClassify Man page
knnClassify,data.frame-method Man page
knnClassify,ddpcrPlate-method Man page
knnClassify,ddpcrWell-method Man page
mahDist Source code
mahalanobisRain Man page
mahalanobisRain,data.frame-method Man page
mahalanobisRain,ddpcrPlate-method Man page
mahalanobisRain,ddpcrWell-method Man page
matrixInverse Source code
multivariateNormalRain Man page
multivariateRain Man page
mutantCopiesSummary Man page Source code
mvNormalRain Man page
mvnRain Man page
numDroplets Man page
numDroplets,ddpcrPlate-method Man page
numDroplets,ddpcrWell-method Man page
numDrops Man page
numOfDroplets Man page
numberDroplets Man page
numberDrops Man page
numberOfDroplets Man page
numberOfDrops Man page
numberOfWells Source code
numericInputRow Man page Source code
parseClusterCounts Man page Source code
plateCenters Man page
plateCentres Man page
plateClassMethod Man page
plateClassName Man page
plateClassification Man page
plateClassification,ddpcrPlate-method Man page
plateClassification<- Man page
plateClassification<-,ddpcrPlate,character,factor-method Man page
plateClassification<-,ddpcrPlate,character,list-method Man page
plateClassificationMethod Man page
plateClassificationMethod,ddpcrPlate-method Man page
plateClassificationMethod<- Man page
plateClassificationMethod<-,ddpcrPlate-method Man page
plateClassificationName Man page
plateSummary Man page
plateSummary,ddpcrPlate-method Man page
plateSummary,list-method Man page
plotAll Man page
positiveCounts Man page Source code
readCSVDataFrame Man page Source code
relabelClasses Man page Source code
removeDropletClasses Man page
removeDropletClasses,data.frame-method Man page
removeDropletClasses,ddpcrPlate-method Man page
removeDropletClasses,ddpcrWell-method Man page
renormaliseByChannel Source code
renormalisePlate Man page Source code
renormaliseWell Source code
roundIt Source code
sTwoDimDataFrame Source code
sWideForm Source code
sdRain Man page
sdRain,data.frame-method Man page
sdRain,ddpcrPlate-method Man page
sdRain,ddpcrWell-method Man page
setChannelNames Man page
setChannelNames,data.frame-method Man page
setChannelNames,list-method Man page
setDropVol Man page
setDropVolume Man page
setDropletVol Man page
setDropletVolume Man page Source code
shinyVis Man page
shinyVisApp Man page Source code
shinyVisServer Man page Source code
shinyVisUI Man page Source code
show,ddpcrPlate-method Man page
show,ddpcrWell-method Man page
slice Source code
sortDataFrame Man page Source code
sortWells Man page Source code
textInputRow Man page Source code
thresholdClassify Man page
thresholdClassify,data.frame-method Man page
thresholdClassify,ddpcrPlate-method Man page
thresholdClassify,ddpcrWell-method Man page
totalCopies Source code
twoddpcr Man page
twoddpcr-package Man page
wellCenters Man page
wellCentres Man page
wellClassification Man page
wellClassification,ddpcrWell-method Man page
wellClassification<- Man page
wellClassification<-,ddpcrWell-method Man page
wellClassificationMethod Man page
wellClassificationMethod,ddpcrWell-method Man page
wellClassificationMethod<- Man page
wellClassificationMethod<-,ddpcrWell-method Man page
whiteTheme Man page Source code
wildTypeCopiesSummary Man page Source code
twoddpcr documentation built on June 10, 2017, 2:01 a.m.