fullCountsSummary: Take a data frame and compute the abundance of molecules.
In twoddpcr: Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Returns a data frame with basic counts, the concentration of each kind of
target molecule, the ratio ch1:ch2 molecules, and the fractional abundance
of ch1 molecules in the overall count.
Usage
1
2
3
4
5
6
7
8
9
Arguments
df
A data frame with droplet count columns in one of the following
formats:
PP, PN, NP, NN;
Ch1.Ch2., Ch1.Ch2..1, Ch1.Ch2..2,
Ch1.Ch2..3;
Ch1+Ch2+, Ch1+Ch2-, Ch1-Ch2+, Ch1-Ch2-;
or
Ch1pCh2p, Ch1pCh2n, Ch1nCh2p, Ch1nCh2n.
ch1Label
The prefix to use for the channel 1 target. Defaults to
"Mt".
ch2Label
The prefix to use for the channel 2 target. Defaults to
"Wt".
rows
A vector of rows (numbers or well names) to keep from the
original data frame. If set to NULL, all wells will be used. Defaults
to NULL.
rowID
If set, this field is used as the row names. If NULL,
the existing row names from df are used. Defaults to NULL.
keepCols
A vector of columns to keep from df. If NULL,
no extra columns are added. Defaults to NULL.
keepColNames
A vector of new column names for keepCols. If
NULL, the column names from keepCols are reused. Defaults to
NULL.
Value
A data frame with
-
rowID as the row names (if given);
the droplet counts per channel;
the number of ch1 and ch2 positive and negative readings;
the ch1 and ch2 concentration, copies per 20ul, and total copies per
20ul;
the ratio of ch1 to ch2 molecules; and
the fractional abundance of ch1 molecules in the overall molecule
count (as a percentage).
Author(s)
Anthony Chiu, anthony.chiu@cruk.manchester.ac.uk
Examples
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
## Take a data frame with row names given by the well names. Get estimates
## for the numbers of molecules in each sample..
fullCountsSummary(KRAScounts)
## Keep only the row numbers 3, 6 and 9.
fullCountsSummary(KRAScounts, rows=c(3, 6, 9))
## Keep only the rows labelled "F03", "A04", "D04".
fullCountsSummary(KRAScounts, rows=c("F03", "A04", "D04"))
## Take a data frame with a 'Well' column and do the same as above.
fullCountsSummary(KRAScountsWellCol, rowID="Well")
## Keep the 'InputAmount' column.
fullCountsSummary(KRAScounts, keepCols=c("InputAmount"))
## Keep the 'InputAmount' column and rename it.
fullCountsSummary(KRAScounts, keepCols=c("InputAmount"),
keepColNames=c("NanogramsIn"))
Example output
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
E03 262 273 5831 6238 12604 535 12069 6093
F03 245 256 5937 5957 12395 501 11894 6182
G03 197 222 4945 4874 10238 419 9819 5142
H03 23 96 1637 9935 11691 119 11572 1660
A04 20 102 1856 10848 12826 122 12704 1876
B04 18 113 1935 11007 13073 131 12942 1953
C04 1 34 470 11842 12347 35 12312 471
D04 2 37 500 13146 13685 39 13646 502
E04 1 29 421 11165 11616 30 11586 422
F04 0 7 173 14870 15050 7 15043 173
G04 0 7 118 12810 12935 7 12928 118
H04 0 5 113 12398 12516 5 12511 113
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6511 51.0282850 777.08373 1020.565700
F03 6213 48.5401108 812.52858 970.802217
G03 5096 49.1611810 820.76514 983.223620
H03 10031 12.0363858 180.16355 240.727716
A04 10950 11.2440661 186.04106 224.881323
B04 11120 11.8484682 190.35735 236.969363
C04 11876 3.3396730 45.75713 66.793460
D04 13183 3.3575342 43.96732 67.150685
E04 11194 3.0423358 43.53593 60.846715
F04 14877 0.5473229 13.60188 10.946458
G04 12817 0.6368398 10.78165 12.736797
H04 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
G03 197 222 4945 4874 10238 419 9819 5142
B04 18 113 1935 11007 13073 131 12942 1953
E04 1 29 421 11165 11616 30 11586 422
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
G03 5096 49.161181 820.76514 983.22362
B04 11120 11.848468 190.35735 236.96936
E04 11194 3.042336 43.53593 60.84672
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
G03 16415.3028 17398.5264 0.05989677 5.651189
B04 3807.1470 4044.1163 0.06224329 5.859608
E04 870.7185 931.5652 0.06988104 6.531664
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
F03 245 256 5937 5957 12395 501 11894 6182
A04 20 102 1856 10848 12826 122 12704 1876
D04 2 37 500 13146 13685 39 13646 502
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
F03 6213 48.540111 812.52858 970.80222
A04 10950 11.244066 186.04106 224.88132
D04 13183 3.357534 43.96732 67.15068
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
F03 16250.5716 17221.3738 0.05973957 5.637194
A04 3720.8213 3945.7026 0.06043863 5.699399
D04 879.3464 946.4971 0.07636431 7.094653
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
E03 262 273 5831 6238 12604 535 12069 6093
F03 245 256 5937 5957 12395 501 11894 6182
G03 197 222 4945 4874 10238 419 9819 5142
H03 23 96 1637 9935 11691 119 11572 1660
A04 20 102 1856 10848 12826 122 12704 1876
B04 18 113 1935 11007 13073 131 12942 1953
C04 1 34 470 11842 12347 35 12312 471
D04 2 37 500 13146 13685 39 13646 502
E04 1 29 421 11165 11616 30 11586 422
F04 0 7 173 14870 15050 7 15043 173
G04 0 7 118 12810 12935 7 12928 118
H04 0 5 113 12398 12516 5 12511 113
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6511 51.0282850 777.08373 1020.565700
F03 6213 48.5401108 812.52858 970.802217
G03 5096 49.1611810 820.76514 983.223620
H03 10031 12.0363858 180.16355 240.727716
A04 10950 11.2440661 186.04106 224.881323
B04 11120 11.8484682 190.35735 236.969363
C04 11876 3.3396730 45.75713 66.793460
D04 13183 3.3575342 43.96732 67.150685
E04 11194 3.0423358 43.53593 60.846715
F04 14877 0.5473229 13.60188 10.946458
G04 12817 0.6368398 10.78165 12.736797
H04 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
PP PN NP NN InputAmount AcceptedDroplets MtPositives MtNegatives
E03 262 273 5831 6238 64 12604 535 12069
F03 245 256 5937 5957 64 12395 501 11894
G03 197 222 4945 4874 64 10238 419 9819
H03 23 96 1637 9935 16 11691 119 11572
A04 20 102 1856 10848 16 12826 122 12704
B04 18 113 1935 11007 16 13073 131 12942
C04 1 34 470 11842 4 12347 35 12312
D04 2 37 500 13146 4 13685 39 13646
E04 1 29 421 11165 4 11616 30 11586
F04 0 7 173 14870 1 15050 7 15043
G04 0 7 118 12810 1 12935 7 12928
H04 0 5 113 12398 1 12516 5 12511
WtPositives WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6093 6511 51.0282850 777.08373 1020.565700
F03 6182 6213 48.5401108 812.52858 970.802217
G03 5142 5096 49.1611810 820.76514 983.223620
H03 1660 10031 12.0363858 180.16355 240.727716
A04 1876 10950 11.2440661 186.04106 224.881323
B04 1953 11120 11.8484682 190.35735 236.969363
C04 471 11876 3.3396730 45.75713 66.793460
D04 502 13183 3.3575342 43.96732 67.150685
E04 422 11194 3.0423358 43.53593 60.846715
F04 173 14877 0.5473229 13.60188 10.946458
G04 118 12817 0.6368398 10.78165 12.736797
H04 113 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
PP PN NP NN NanogramsIn AcceptedDroplets MtPositives MtNegatives
E03 262 273 5831 6238 64 12604 535 12069
F03 245 256 5937 5957 64 12395 501 11894
G03 197 222 4945 4874 64 10238 419 9819
H03 23 96 1637 9935 16 11691 119 11572
A04 20 102 1856 10848 16 12826 122 12704
B04 18 113 1935 11007 16 13073 131 12942
C04 1 34 470 11842 4 12347 35 12312
D04 2 37 500 13146 4 13685 39 13646
E04 1 29 421 11165 4 11616 30 11586
F04 0 7 173 14870 1 15050 7 15043
G04 0 7 118 12810 1 12935 7 12928
H04 0 5 113 12398 1 12516 5 12511
WtPositives WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6093 6511 51.0282850 777.08373 1020.565700
F03 6182 6213 48.5401108 812.52858 970.802217
G03 5142 5096 49.1611810 820.76514 983.223620
H03 1660 10031 12.0363858 180.16355 240.727716
A04 1876 10950 11.2440661 186.04106 224.881323
B04 1953 11120 11.8484682 190.35735 236.969363
C04 471 11876 3.3396730 45.75713 66.793460
D04 502 13183 3.3575342 43.96732 67.150685
E04 422 11194 3.0423358 43.53593 60.846715
F04 173 14877 0.5473229 13.60188 10.946458
G04 118 12817 0.6368398 10.78165 12.736797
H04 113 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
twoddpcr documentation built on Nov. 8, 2020, 5:49 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Returns a data frame with basic counts, the concentration of each kind of target molecule, the ratio ch1:ch2 molecules, and the fractional abundance of ch1 molecules in the overall count.
Usage
1 2 3 4 5 6 7 8 9 |
Arguments
df |
A data frame with droplet count columns in one of the following formats:
|
ch1Label |
The prefix to use for the channel 1 target. Defaults to "Mt". |
ch2Label |
The prefix to use for the channel 2 target. Defaults to "Wt". |
rows |
A vector of rows (numbers or well names) to keep from the
original data frame. If set to |
rowID |
If set, this field is used as the row names. If |
keepCols |
A vector of columns to keep from |
keepColNames |
A vector of new column names for |
Value
A data frame with
-
rowIDas the row names (if given); the droplet counts per channel;
the number of ch1 and ch2 positive and negative readings;
the ch1 and ch2 concentration, copies per 20ul, and total copies per 20ul;
the ratio of ch1 to ch2 molecules; and
the fractional abundance of ch1 molecules in the overall molecule count (as a percentage).
Author(s)
Anthony Chiu, anthony.chiu@cruk.manchester.ac.uk
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | ## Take a data frame with row names given by the well names. Get estimates
## for the numbers of molecules in each sample..
fullCountsSummary(KRAScounts)
## Keep only the row numbers 3, 6 and 9.
fullCountsSummary(KRAScounts, rows=c(3, 6, 9))
## Keep only the rows labelled "F03", "A04", "D04".
fullCountsSummary(KRAScounts, rows=c("F03", "A04", "D04"))
## Take a data frame with a 'Well' column and do the same as above.
fullCountsSummary(KRAScountsWellCol, rowID="Well")
## Keep the 'InputAmount' column.
fullCountsSummary(KRAScounts, keepCols=c("InputAmount"))
## Keep the 'InputAmount' column and rename it.
fullCountsSummary(KRAScounts, keepCols=c("InputAmount"),
keepColNames=c("NanogramsIn"))
|
Example output
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
E03 262 273 5831 6238 12604 535 12069 6093
F03 245 256 5937 5957 12395 501 11894 6182
G03 197 222 4945 4874 10238 419 9819 5142
H03 23 96 1637 9935 11691 119 11572 1660
A04 20 102 1856 10848 12826 122 12704 1876
B04 18 113 1935 11007 13073 131 12942 1953
C04 1 34 470 11842 12347 35 12312 471
D04 2 37 500 13146 13685 39 13646 502
E04 1 29 421 11165 11616 30 11586 422
F04 0 7 173 14870 15050 7 15043 173
G04 0 7 118 12810 12935 7 12928 118
H04 0 5 113 12398 12516 5 12511 113
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6511 51.0282850 777.08373 1020.565700
F03 6213 48.5401108 812.52858 970.802217
G03 5096 49.1611810 820.76514 983.223620
H03 10031 12.0363858 180.16355 240.727716
A04 10950 11.2440661 186.04106 224.881323
B04 11120 11.8484682 190.35735 236.969363
C04 11876 3.3396730 45.75713 66.793460
D04 13183 3.3575342 43.96732 67.150685
E04 11194 3.0423358 43.53593 60.846715
F04 14877 0.5473229 13.60188 10.946458
G04 12817 0.6368398 10.78165 12.736797
H04 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
G03 197 222 4945 4874 10238 419 9819 5142
B04 18 113 1935 11007 13073 131 12942 1953
E04 1 29 421 11165 11616 30 11586 422
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
G03 5096 49.161181 820.76514 983.22362
B04 11120 11.848468 190.35735 236.96936
E04 11194 3.042336 43.53593 60.84672
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
G03 16415.3028 17398.5264 0.05989677 5.651189
B04 3807.1470 4044.1163 0.06224329 5.859608
E04 870.7185 931.5652 0.06988104 6.531664
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
F03 245 256 5937 5957 12395 501 11894 6182
A04 20 102 1856 10848 12826 122 12704 1876
D04 2 37 500 13146 13685 39 13646 502
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
F03 6213 48.540111 812.52858 970.80222
A04 10950 11.244066 186.04106 224.88132
D04 13183 3.357534 43.96732 67.15068
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
F03 16250.5716 17221.3738 0.05973957 5.637194
A04 3720.8213 3945.7026 0.06043863 5.699399
D04 879.3464 946.4971 0.07636431 7.094653
PP PN NP NN AcceptedDroplets MtPositives MtNegatives WtPositives
E03 262 273 5831 6238 12604 535 12069 6093
F03 245 256 5937 5957 12395 501 11894 6182
G03 197 222 4945 4874 10238 419 9819 5142
H03 23 96 1637 9935 11691 119 11572 1660
A04 20 102 1856 10848 12826 122 12704 1876
B04 18 113 1935 11007 13073 131 12942 1953
C04 1 34 470 11842 12347 35 12312 471
D04 2 37 500 13146 13685 39 13646 502
E04 1 29 421 11165 11616 30 11586 422
F04 0 7 173 14870 15050 7 15043 173
G04 0 7 118 12810 12935 7 12928 118
H04 0 5 113 12398 12516 5 12511 113
WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6511 51.0282850 777.08373 1020.565700
F03 6213 48.5401108 812.52858 970.802217
G03 5096 49.1611810 820.76514 983.223620
H03 10031 12.0363858 180.16355 240.727716
A04 10950 11.2440661 186.04106 224.881323
B04 11120 11.8484682 190.35735 236.969363
C04 11876 3.3396730 45.75713 66.793460
D04 13183 3.3575342 43.96732 67.150685
E04 11194 3.0423358 43.53593 60.846715
F04 14877 0.5473229 13.60188 10.946458
G04 12817 0.6368398 10.78165 12.736797
H04 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
PP PN NP NN InputAmount AcceptedDroplets MtPositives MtNegatives
E03 262 273 5831 6238 64 12604 535 12069
F03 245 256 5937 5957 64 12395 501 11894
G03 197 222 4945 4874 64 10238 419 9819
H03 23 96 1637 9935 16 11691 119 11572
A04 20 102 1856 10848 16 12826 122 12704
B04 18 113 1935 11007 16 13073 131 12942
C04 1 34 470 11842 4 12347 35 12312
D04 2 37 500 13146 4 13685 39 13646
E04 1 29 421 11165 4 11616 30 11586
F04 0 7 173 14870 1 15050 7 15043
G04 0 7 118 12810 1 12935 7 12928
H04 0 5 113 12398 1 12516 5 12511
WtPositives WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6093 6511 51.0282850 777.08373 1020.565700
F03 6182 6213 48.5401108 812.52858 970.802217
G03 5142 5096 49.1611810 820.76514 983.223620
H03 1660 10031 12.0363858 180.16355 240.727716
A04 1876 10950 11.2440661 186.04106 224.881323
B04 1953 11120 11.8484682 190.35735 236.969363
C04 471 11876 3.3396730 45.75713 66.793460
D04 502 13183 3.3575342 43.96732 67.150685
E04 422 11194 3.0423358 43.53593 60.846715
F04 173 14877 0.5473229 13.60188 10.946458
G04 118 12817 0.6368398 10.78165 12.736797
H04 113 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
PP PN NP NN NanogramsIn AcceptedDroplets MtPositives MtNegatives
E03 262 273 5831 6238 64 12604 535 12069
F03 245 256 5937 5957 64 12395 501 11894
G03 197 222 4945 4874 64 10238 419 9819
H03 23 96 1637 9935 16 11691 119 11572
A04 20 102 1856 10848 16 12826 122 12704
B04 18 113 1935 11007 16 13073 131 12942
C04 1 34 470 11842 4 12347 35 12312
D04 2 37 500 13146 4 13685 39 13646
E04 1 29 421 11165 4 11616 30 11586
F04 0 7 173 14870 1 15050 7 15043
G04 0 7 118 12810 1 12935 7 12928
H04 0 5 113 12398 1 12516 5 12511
WtPositives WtNegatives MtConcentration WtConcentration MtCopiesPer20uLWell
E03 6093 6511 51.0282850 777.08373 1020.565700
F03 6182 6213 48.5401108 812.52858 970.802217
G03 5142 5096 49.1611810 820.76514 983.223620
H03 1660 10031 12.0363858 180.16355 240.727716
A04 1876 10950 11.2440661 186.04106 224.881323
B04 1953 11120 11.8484682 190.35735 236.969363
C04 471 11876 3.3396730 45.75713 66.793460
D04 502 13183 3.3575342 43.96732 67.150685
E04 422 11194 3.0423358 43.53593 60.846715
F04 173 14877 0.5473229 13.60188 10.946458
G04 118 12817 0.6368398 10.78165 12.736797
H04 113 12403 0.4700806 10.66994 9.401611
WtCopiesPer20uLWell TotalCopiesPer20uLWell Ratio FracAbun
E03 15541.6746 16562.2403 0.06566639 6.162003
F03 16250.5716 17221.3738 0.05973957 5.637194
G03 16415.3028 17398.5264 0.05989677 5.651189
H03 3603.2710 3843.9987 0.06680811 6.262430
A04 3720.8213 3945.7026 0.06043863 5.699399
B04 3807.1470 4044.1163 0.06224329 5.859608
C04 915.1426 981.9361 0.07298694 6.802221
D04 879.3464 946.4971 0.07636431 7.094653
E04 870.7185 931.5652 0.06988104 6.531664
F04 272.0375 282.9840 0.04023878 3.868225
G04 215.6330 228.3698 0.05906702 5.577269
H04 213.3988 222.8004 0.04405654 4.219747
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.