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#' @title Standardising Taxonomic Names in Australian Plants
#'
#' @description
#' The process of standardising taxon names is necessary when working with
#' biodiversity data. 'APCalign' uses the Australian Plant Name Index (APNI)
#' and the Australian Plant Census (APC) to align and update plant taxon names
#' to current, accepted standards. 'APCalign' can also supply information about
#' the established status of plant taxa across different states/territories.
#'
#' @name APCalign
#' @docType package
#' @references If you have any questions, comments or suggestions, please
#' submit an issue at our
#' [GitHub repository](https://github.com/traitecoevo/APCalign/issues)
#' @keywords internal
#' @section Functions:
#' **Standarise taxon names**
#'
#' * [load_taxonomic_resources]
#' * [create_taxonomic_update_lookup]
#' * [align_taxa]
#' * [update_taxonomy]
#'
#' **Established status by region**
#'
#' * [state_diversity_counts]
#' * [create_species_state_origin_matrix]
#' * [native_anywhere_in_australia]
#'
"_PACKAGE"
## usethis namespace: start
## usethis namespace: end
NULL
utils::globalVariables(
c(
".",
"accepted_name",
"accepted_name_usage",
"accepted_name_usage_ID",
"accepted_name_usage_ID_genus",
"aligned_name",
"aligned_minus_genus",
"aligned_reason",
"alignment_code",
"alternative_accepted_name",
"alternative_possible_names",
"binomial",
"canonical_name",
"canonicalName",
"ccAttributionIRI",
"checked",
"cleaned_name",
"family",
"family_accepted",
"fuzzy_match_genus",
"fuzzy_match_genus_APNI",
"fuzzy_match_genus_synonym",
"fuzzy_match_family",
"fuzzy_match_family_synonym",
"genus",
"genus_accepted",
"known",
"my_order",
"name_element",
"name_type",
"native_anywhere",
"number_of_collapsed_taxa",
"original_name",
"scientific_name",
"scientific_name_authorship",
"scientific_name_ID",
"stripped_canonical",
"stripped_canonical2",
"stripped_name",
"stripped_name2",
"subclass",
"taxon_distribution",
"taxon_ID",
"taxon_ID_aligned",
"taxon_rank",
"txtProgressBar",
"setTxtProgressBar",
"taxonomic_status",
"taxonomic_status_aligned",
"taxonomic_status_genus",
"taxonomic_dataset",
"taxonomic_dataset_genus",
"trinomial",
"aligned_name_tmp",
"identifier_string",
"identifier_string2",
"suggested_name",
"update_reason",
"taxon_ID_genus",
"possible_names_collapsed",
"number_of_collapsed_taxa",
"row_number",
"accepted_name_2",
"alternative_accepted_name_tmp",
"pro_parte",
"suggested_collapsed_name"
)
)
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