ARTP: Gene and Pathway p-values computed using the Adaptive Rank Truncated Product

A package for calculating gene and pathway p-values using the Adaptive Rank Truncated Product test

Install the latest version of this package by entering the following in R:
install.packages("ARTP")
AuthorKai Yu, Qizhai Li and William Wheeler
Date of publication2014-02-20 18:51:03
MaintainerBill Wheeler <wheelerb@imsweb.com>
LicenseGPL-2
Version2.0.4

View on CRAN

Files

inst
inst/sampleData
inst/sampleData/gene_SNP_data.txt
inst/sampleData/geno_data.txt
inst/sampleData/perm_pvalues.txt
inst/sampleData/obs_pvalues.txt
inst/sampleData/pheno_data.txt
inst/doc
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
inst/doc/vignette.R
src
src/code.c
NAMESPACE
NEWS
data
data/perm_pvalues.txt.gz
data/pheno_data.txt.gz
data/gene_SNP_data.txt.gz
data/geno_data.rda
data/obs_pvalues.txt.gz
R
R/wga_read.R R/combineBypathway_Kai_C.R R/wga.R R/wga_stat.R R/wga_glu.R R/wga_combine.R R/wga_permReg.R R/wga_util.R R/wga_plot.R
vignettes
vignettes/vignette.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/snp.list.Rd man/obs_pvalues.Rd man/gene.list.Rd man/ARTP.Rd man/runPermutations.Rd man/single.marker.test.Rd man/pheno_data.Rd man/gene_SNP_data.Rd man/pheno.list.Rd man/perm_pvalues.Rd man/geno_data.Rd man/plot_genes.Rd man/ARTP_pathway.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.