ARTP: Gene and Pathway p-values computed using the Adaptive Rank Truncated Product

A package for calculating gene and pathway p-values using the Adaptive Rank Truncated Product test

AuthorKai Yu, Qizhai Li and William Wheeler
Date of publication2014-02-20 18:51:03
MaintainerBill Wheeler <wheelerb@imsweb.com>
LicenseGPL-2
Version2.0.4

View on CRAN

Files

ARTP
ARTP/inst
ARTP/inst/sampleData
ARTP/inst/sampleData/gene_SNP_data.txt
ARTP/inst/sampleData/geno_data.txt
ARTP/inst/sampleData/perm_pvalues.txt
ARTP/inst/sampleData/obs_pvalues.txt
ARTP/inst/sampleData/pheno_data.txt
ARTP/inst/doc
ARTP/inst/doc/vignette.Rnw
ARTP/inst/doc/vignette.pdf
ARTP/inst/doc/vignette.R
ARTP/src
ARTP/src/code.c
ARTP/NAMESPACE
ARTP/NEWS
ARTP/data
ARTP/data/perm_pvalues.txt.gz
ARTP/data/pheno_data.txt.gz
ARTP/data/gene_SNP_data.txt.gz
ARTP/data/geno_data.rda
ARTP/data/obs_pvalues.txt.gz
ARTP/R
ARTP/R/wga_read.R ARTP/R/combineBypathway_Kai_C.R ARTP/R/wga.R ARTP/R/wga_stat.R ARTP/R/wga_glu.R ARTP/R/wga_combine.R ARTP/R/wga_permReg.R ARTP/R/wga_util.R ARTP/R/wga_plot.R
ARTP/vignettes
ARTP/vignettes/vignette.Rnw
ARTP/MD5
ARTP/build
ARTP/build/vignette.rds
ARTP/DESCRIPTION
ARTP/man
ARTP/man/snp.list.Rd ARTP/man/obs_pvalues.Rd ARTP/man/gene.list.Rd ARTP/man/ARTP.Rd ARTP/man/runPermutations.Rd ARTP/man/single.marker.test.Rd ARTP/man/pheno_data.Rd ARTP/man/gene_SNP_data.Rd ARTP/man/pheno.list.Rd ARTP/man/perm_pvalues.Rd ARTP/man/geno_data.Rd ARTP/man/plot_genes.Rd ARTP/man/ARTP_pathway.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.