obs_pvalues: Observed p-values

In ARTP: Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product

Description

Sample file of observed p-values for the example in ARTP_pathway

Details

This is a comma delimited file where the first row contains the SNP ids, second row contains the p-values, third row contains the method of p-value computation (see single.marker.test), fourth row contains the estimated main efect of the SNP, and fifth row contains the estimated SNP main effect standard error.

Examples

  # Read in and print the data
  f <- system.file("sampleData", "obs_pvalues.txt", package="ARTP")
  x <- scan(f, what="character", sep="\n")
  substring(x, 1, 50)

ARTP documentation built on May 2, 2019, 6:51 a.m.