pheno_data: Sample covariate and response data

In ARTP: Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product

Description

Sample covariate and response data for runPermutations

Details

The file pheno_data.txt is a tab-delimited type 3 data set (see file.type in pheno.list). It contains the variables:

• ID The subject id

• Y Case-control status (0, 1)

• X1 Continuous covariate

• X2 Continuous covariate

Examples

 # Load and print the first 5 rows 
 data(pheno_data, package="ARTP") 

 pheno_data[1:5, ]

Example output

    ID Y         X1        X2
1 ID_1 0 0.35360608 0.2736227
2 ID_2 1 0.36644144 0.5938669
3 ID_3 0 0.28710013 0.1601848
4 ID_4 1 0.07997291 0.8534302
5 ID_5 1 0.36545427 0.8477392

ARTP documentation built on May 2, 2019, 6:51 a.m.