geno_data: Sample genotype data

In ARTP: Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product

Description

Sample genotype data for runPermutations

Details

geno_data.rda is a type 1 data file (see file.type in snp.list). This data contains 50 SNPs and 500 subjects, and is tab delimited. The first row of the data contains the subject ids. Starting from row 2, are the SNP ids and the genotypes for each subject. The genotypes are coded as AA, AG, GG.

Examples

 # Load and print a substring the first 5 lines
 data(geno_data, package="ARTP")
 
 substring(geno_data[1:5], 1, 50)

ARTP documentation built on May 2, 2019, 6:51 a.m.