CheckInputsSS: Input Checks for Summary Statistics

In AllelicSeries: Allelic Series Test

Input Checks for Summary Statistics

Description

Input Checks for Summary Statistics

Usage

CheckInputsSS(anno, beta, se, lambda, ld, weights, is_skat = FALSE, maf = NULL)

Arguments

anno	(snps x 1) annotation vector with values in c(0, 1, 2).
beta	(snps x 1) vector of effect sizes for the coding genetic variants within a gene.
se	(snps x 1) vector of standard errors for the effect sizes.
lambda	Genomic inflation factor.
ld	(snps x snps) matrix of correlations among the genetic variants. Although ideally provided, an identity matrix is assumed if not.
weights	(L x 1) annotation category weights.
is_skat	Logical, is the check for the SKAT test?
maf	(snps x 1) vector of minor allele frequencies. Although ideally provided, defaults to the zero vector.

Value

Logical indicating whether the matrix was positive definite.

AllelicSeries documentation built on April 3, 2025, 7:46 p.m.