GenAnno: Generate Genotype Annotations
In AllelicSeries: Allelic Series Test
View source: R/generate_data.R
GenAnno R Documentation
Generate Genotype Annotations
Description
Returns a vector of length = the number of columns (SNPs) in the genotype
matrix. Each SNP is categorized into one of L categories, where L is
determined by the length of prop_anno.
Usage
GenAnno(snps, prop_anno = c(0.5, 0.4, 0.1))
Arguments
snps
Number of SNPs in the gene.
prop_anno
Proportions of annotations in each category. Length should
equal the number of annotation categories. Default of c(0.5, 0.4, 0.1) is
based on the approximate empirical frequencies of BMVs, DMVs, and PTVs.
Value
(snps x 1) integer vector.
AllelicSeries documentation built on April 3, 2025, 7:46 p.m.
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View source: R/generate_data.R
| GenAnno | R Documentation |
Generate Genotype Annotations
Description
Returns a vector of length = the number of columns (SNPs) in the genotype
matrix. Each SNP is categorized into one of L categories, where L is
determined by the length of prop_anno.
Usage
GenAnno(snps, prop_anno = c(0.5, 0.4, 0.1))
Arguments
snps |
Number of SNPs in the gene. |
prop_anno |
Proportions of annotations in each category. Length should equal the number of annotation categories. Default of c(0.5, 0.4, 0.1) is based on the approximate empirical frequencies of BMVs, DMVs, and PTVs. |
Value
(snps x 1) integer vector.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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