MapPop-class: Raw population with genetic map

In AlphaSimR: Breeding Program Simulations

Raw population with genetic map

Description

Extends RawPop-class to add a genetic map. This is the first object created in a simulation. It is used for creating initial populations and setting traits in the SimParam.

Usage

## S4 method for signature 'MapPop'
x[i]

## S4 method for signature 'MapPop'
c(x, ...)

isMapPop(x)

Arguments

x	a 'MapPop' object
i	index of individuals
...	additional 'MapPop' objects

Methods (by generic)

• [: Extract MapPop by index

• c(MapPop): Combine multiple MapPops

Functions

• isMapPop(): Test if object is of a MapPop class

Slots

genMap

list of chromosome genetic maps

centromere

vector of centromere positions

inbred

indicates whether the individuals are fully inbred

AlphaSimR documentation built on Nov. 8, 2025, 5:10 p.m.