Files in AlphaSimR
Breeding Program Simulations
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/mergePops.R
R/importData.R
R/pullGeno.R
R/Class-HybridPop.R
R/hybrids.R
R/writePlink.R
R/AlphaSimR.R
R/polyploids.R
R/phenotypes.R
R/founderPop.R
R/misc.R
R/Class-Pop.R
R/popSummary.R
R/Class-LociMap.R
R/writeRecords.R
R/Class-RRsol.R
R/GS.R
R/selection.R
R/crossing.R
R/Class-SimParam.R
src/simulator.cpp
src/Makevars.win
src/Makevars
src/simulator.h
src/RcppExports.cpp
src/alphasimr.h
src/optimize.cpp
src/getGeno.h
src/MME.cpp
src/alphaSuite.cpp
src/meiosis.cpp
src/packHaplo.cpp
src/misc.cpp
src/misc.h
src/altAddTraitAD.cpp
src/calcGenParam.cpp
src/getGeno.cpp
src/datastructures.cpp
src/algorithm.cpp
src/ibd.cpp
src/getHybridGv.cpp
src/constants.h
src/getGv.cpp
src/optimize.h
inst/REFERENCES.bib
inst/CITATION
inst/doc/traits.Rmd
inst/doc/traits.pdf
inst/doc/intro.Rmd
inst/doc/intro.html
inst/doc/intro.R
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-selection.R
tests/testthat/test-editGenome.R
tests/testthat/test-addTrait.R
tests/testthat/test-importData.R
tests/testthat/test-hybrids.R
tests/testthat/test-statistics.R
tests/testthat/test-misc.R
tests/testthat/test-crossing.R
vignettes/traits.Rmd
vignettes/intro.Rmd
vignettes/AlphaSimR.bib
vignettes/articles/GenomicSelection.Rmd
vignettes/articles/QuantGen.Rmd
vignettes/articles/Traits.Rmd
vignettes/articles/DataImport.Rmd
vignettes/articles/Misc.Rmd
vignettes/articles/Meiosis.Rmd
vignettes/articles/AlphaSimR.Rmd
vignettes/articles/Genome.Rmd
man/usefulness.Rd
man/pullSegSiteHaplo.Rd
man/solveRRBLUP_EM3.Rd
man/NamedMapPop-class.Rd
man/getQtlMap.Rd
man/solveMVM.Rd
man/Pop-class.Rd
man/mergeGenome.Rd
man/randCross.Rd
man/getGenMap.Rd
man/newPop.Rd
man/varD.Rd
man/makeDH.Rd
man/makeCross2.Rd
man/pullSnpHaplo.Rd
man/meanEBV.Rd
man/addSegSite.Rd
man/varP.Rd
man/self.Rd
man/pheno.Rd
man/solveRRBLUPMV.Rd
man/ebv.Rd
man/transMat.Rd
man/selIndex.Rd
man/genicVarA.Rd
man/gv.Rd
man/makeCross.Rd
man/pullSegSiteGeno.Rd
man/bv.Rd
man/newMultiPop.Rd
man/editGenome.Rd
man/runMacs.Rd
man/genicVarAA.Rd
man/TraitADG-class.Rd
man/RRBLUP_D2.Rd
man/solveRRBLUPMK.Rd
man/selInt.Rd
man/AlphaSimR-package.Rd
man/setMarkerHaplo.Rd
man/importHaplo.Rd
man/hybridCross.Rd
man/pullQtlGeno.Rd
man/setPhenoGCA.Rd
man/getNumThreads.Rd
man/MapPop-class.Rd
man/TraitA-class.Rd
man/getSnpMap.Rd
man/calcGCA.Rd
man/RRBLUP2.Rd
man/mergePops.Rd
man/solveRRBLUP_EM2.Rd
man/RRBLUP_GCA2.Rd
man/newEmptyPop.Rd
man/TraitAG-class.Rd
man/dot-newPop.Rd
man/TraitA2D-class.Rd
man/selectWithinFam.Rd
man/setPhenoProgTest.Rd
man/TraitA2-class.Rd
man/isPop.Rd
man/pullMarkerGeno.Rd
man/RawPop-class.Rd
man/RRsol-class.Rd
man/pullMarkerHaplo.Rd
man/writeRecords.Rd
man/LociMap-class.Rd
man/popVar.Rd
man/genicVarD.Rd
man/TraitAEG-class.Rd
man/editGenomeTopQtl.Rd
man/RRBLUP_GCA.Rd
man/isFemale.Rd
man/HybridPop-class.Rd
man/pullSnpGeno.Rd
man/varG.Rd
man/genParam.Rd
man/pullQtlHaplo.Rd
man/importGenMap.Rd
man/RRBLUPMemUse.Rd
man/varA.Rd
man/quickHaplo.Rd
man/RRBLUP_SCA2.Rd
man/sampleHaplo.Rd
man/mutate.Rd
man/solveRRBLUP.Rd
man/setPheno.Rd
man/MultiPop-class.Rd
man/meanG.Rd
man/selectFam.Rd
man/writePlink.Rd
man/TraitADE-class.Rd
man/pullIbdHaplo.Rd
man/nInd.Rd
man/newMapPop.Rd
man/doubleGenome.Rd
man/smithHazel.Rd
man/solveUVM.Rd
man/selectCross.Rd
man/selectInd.Rd
man/reduceGenome.Rd
man/pedigreeCross.Rd
man/dd.Rd
man/cChr.Rd
man/RRBLUP_D.Rd
man/setEBV.Rd
man/randCross2.Rd
man/solveMKM.Rd
man/getPed.Rd
man/aa.Rd
man/runMacs2.Rd
man/varAA.Rd
man/selectOP.Rd
man/meanP.Rd
man/TraitAD-class.Rd
man/importInbredGeno.Rd
man/attrition.Rd
man/TraitAE-class.Rd
man/RRBLUP.Rd
man/RRBLUP_SCA.Rd
man/resetPop.Rd
man/SimParam.Rd
man/varEBV.Rd
man/TraitADEG-class.Rd
man/genicVarG.Rd
man/fastRRBLUP.Rd
man/solveRRBLUP_EM.Rd
