RawPop-class: Raw Population

In AlphaSimR: Breeding Program Simulations

Raw Population

Description

The raw population class contains only genotype data.

Usage

## S4 method for signature 'RawPop'
x[i]

## S4 method for signature 'RawPop'
c(x, ...)

## S4 method for signature 'RawPop'
show(object)

isRawPop(x)

Arguments

x	a 'RawPop' object
i	index of individuals
...	additional 'RawPop' objects
object	a 'RawPop' object

Methods (by generic)

• [: Extract RawPop by index

• c(RawPop): Combine multiple RawPops

• show(RawPop): Show population summary

Functions

• isRawPop(): Test if object is of a RawPop class

Slots

nInd

number of individuals

nChr

number of chromosomes

ploidy

level of ploidy

nLoci

number of loci per chromosome

geno

list of nChr length containing chromosome genotypes. Each element is a three dimensional array of raw values. The array dimensions are nLoci by ploidy by nInd.

AlphaSimR documentation built on Nov. 1, 2024, 5:07 p.m.