pullQtlGeno: Pull QTL genotypes
In AlphaSimR: Breeding Program Simulations

pullQtlGeno

R Documentation

Pull QTL genotypes

Description

Retrieves QTL genotype data

Usage

pullQtlGeno(pop, trait = 1, chr = NULL, asRaw = FALSE, simParam = NULL)

Arguments

`pop`	an object of `Pop-class`
`trait`	an integer. Indicates which trait's QTL genotypes to retrieve.
`chr`	a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved.
`asRaw`	return in raw (byte) format
`simParam`	an object of `SimParam`

Value

Returns a matrix of QTL genotypes.

Examples

#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=15)

#Set simulation parameters
SP = SimParam$new(founderPop)

SP$addTraitA(10)
SP$addSnpChip(5)

#Create population
pop = newPop(founderPop, simParam=SP)
pullQtlGeno(pop, simParam=SP)

AlphaSimR documentation built on Nov. 2, 2023, 6:01 p.m.