pullIbdHaplo | R Documentation |
Retrieves IBD haplotype data
pullIbdHaplo(pop, chr = NULL, snpChip = NULL, simParam = NULL)
pop |
an object of |
chr |
a vector of chromosomes to retrieve. If NULL, all chromosomes are retrieved. |
snpChip |
an integer indicating which SNP array loci are to be retrieved. If NULL, all sites are retrieved. |
simParam |
an object of |
Returns a matrix of IBD haplotypes.
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=15)
#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)
SP$addSnpChip(5)
SP$setTrackRec(TRUE)
#Create population
pop = newPop(founderPop, simParam=SP)
pullIbdHaplo(pop, simParam=SP)
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