calculateSCUO: calculates the synonymous codon usage order (SCUO)
In AnaCoDa: Analysis of Codon Data under Stationarity using a Bayesian Framework
Description
Usage
Arguments
Value
Examples
Description
calculateSCUO calulates the SCUO value for each gene in genome. Note that if a codon is absent, this will be treated as NA and will be skipped in final calculation
Usage
1
calculateSCUO(genome)
Arguments
genome
A genome object initialized with initializeGenomeObject.
Value
returns the SCUO value for each gene in genome
Examples
1
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3
4
5
genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
## reading genome
genome <- initializeGenomeObject(file = genome_file)
scuo <- calculateSCUO(genome)
AnaCoDa documentation built on Jan. 8, 2021, 2:37 a.m.
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Description Usage Arguments Value Examples
Description
calculateSCUO calulates the SCUO value for each gene in genome. Note that if a codon is absent, this will be treated as NA and will be skipped in final calculation
Usage
1 | calculateSCUO(genome)
|
Arguments
genome |
A genome object initialized with |
Value
returns the SCUO value for each gene in genome
Examples
1 2 3 4 5 | genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
## reading genome
genome <- initializeGenomeObject(file = genome_file)
scuo <- calculateSCUO(genome)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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