getNoiseOffsetVariance: getNoiseOffsetVariance

In AnaCoDa: Analysis of Codon Data under Stationarity using a Bayesian Framework

Description

Method of Parameter class (access via parameter$<function name>, where parameter is an object initialized by initializeParameterObject). Calculate variance of noise offset parameter used when fitting model with empirical estimates of synthesis rates (ie. withPhi fits)

Arguments

index	mixture index to use. Should be number between 0 and n-1, where n is number of mixtures
samples	number of samples over which to calculate variance
unbiased	If TRUE, should calculate variance using unbiased (N-1). Otherwise, used biased (N) correction

Value

returns variance for noise offset

AnaCoDa documentation built on Jan. 8, 2021, 2:37 a.m.