getObservedSynthesisRateSet: Get gene observed synthesis rates

In AnaCoDa: Analysis of Codon Data under Stationarity using a Bayesian Framework

Description

getObservedSynthesisRateSet returns the observed synthesis rates of the genes within the genome specified.

Usage

getObservedSynthesisRateSet(genome, simulated = FALSE)

Arguments

genome	A genome object initialized with initializeGenomeObject.
simulated	A logical value denoting if the synthesis rates to be listed are simulated or not. The default value is FALSE.

Value

Returns a data.frame with the observed expression values in genome

Examples

genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
expression_file <- system.file("extdata", "expression.csv", package = "AnaCoDa") 
## reading genome
genome <- initializeGenomeObject(file = genome_file)


## return expression values as a data.frame with gene ids in the first column.
expressionValues <- getObservedSynthesisRateSet(genome = genome)

AnaCoDa documentation built on Jan. 8, 2021, 2:37 a.m.