getCodonCounts: Get Codon Counts For all Amino Acids
In AnaCoDa: Analysis of Codon Data under Stationarity using a Bayesian Framework
Description
Usage
Arguments
Details
Value
Examples
Description
provides the codon counts for a fiven amino acid across all genes
Usage
1
getCodonCounts(genome)
Arguments
genome
A genome object from which the counts of each
codon can be obtained.
Details
The returned matrix containes a row for each gene and a column
for each synonymous codon of aa.
Value
Returns a data.frame storing the codon counts for each amino acid.
Examples
1
2
3
4
5
genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
## reading genome
genome <- initializeGenomeObject(file = genome_file)
counts <- getCodonCounts(genome)
AnaCoDa documentation built on Jan. 8, 2021, 2:37 a.m.
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Description Usage Arguments Details Value Examples
Description
provides the codon counts for a fiven amino acid across all genes
Usage
1 | getCodonCounts(genome)
|
Arguments
genome |
A genome object from which the counts of each codon can be obtained. |
Details
The returned matrix containes a row for each gene and a column
for each synonymous codon of aa.
Value
Returns a data.frame storing the codon counts for each amino acid.
Examples
1 2 3 4 5 | genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
## reading genome
genome <- initializeGenomeObject(file = genome_file)
counts <- getCodonCounts(genome)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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