API for BEDASSLE
Quantifies Effects of Geo/Eco Distance on Genetic Differentiation
| Global functions | |
|---|---|
| BB_Likelihood_counts | Man page Source code |
| BB_Prior_prob_phi | Man page Source code |
| BB_Update_mu | Man page Source code |
| BB_Update_phi | Man page Source code |
| BB_Update_thetas | Man page Source code |
| BEDASSLE | Man page |
| BEDASSLE-package | Man page |
| Covariance | Man page Source code |
| HGDP.bedassle.data | Man page |
| Initialize.params | Man page Source code |
| Likelihood_counts | Man page Source code |
| Likelihood_thetas | Man page Source code |
| MCMC | Man page Source code |
| MCMC_BB | Man page Source code |
| Prior_prob_alpha0 | Man page Source code |
| Prior_prob_alpha2 | Man page Source code |
| Prior_prob_alphaD | Man page Source code |
| Prior_prob_alphaE | Man page Source code |
| Prior_prob_beta | Man page Source code |
| Prior_prob_mu | Man page Source code |
| Shift | Man page Source code |
| Update_a0 | Man page Source code |
| Update_a2 | Man page Source code |
| Update_aD | Man page Source code |
| Update_aE | Man page Source code |
| Update_beta | Man page Source code |
| Update_mu | Man page Source code |
| Update_thetas | Man page Source code |
| a0_gibbs_rate | Man page Source code |
| calculate.all.pairwise.Fst | Man page Source code |
| calculate.pairwise.Fst | Man page Source code |
| identify_invariant_loci | Man page Source code |
| link.up.posteriors | Man page Source code |
| load_MCMC_output | Man page Source code |
| load_posterior_predictive_samples | Man page Source code |
| make.continuing.params | Man page Source code |
| mcmc.operators | Man page |
| plot_acceptance_rate | Man page Source code |
| plot_all_acceptance_rates | Man page Source code |
| plot_all_joint_marginals | Man page Source code |
| plot_all_marginals | Man page Source code |
| plot_all_phi_marginals | Man page Source code |
| plot_all_phi_trace | Man page Source code |
| plot_all_trace | Man page Source code |
| plot_joint_marginal | Man page Source code |
| plot_marginal | Man page Source code |
| plot_phi_marginal | Man page Source code |
| plot_phi_trace | Man page Source code |
| plot_posterior_predictive_samples | Man page Source code |
| plot_trace | Man page Source code |
| posterior.predictive.sample | Man page Source code |
| simulate_allele_count_data | Man page Source code |
| transform_frequencies | Man page Source code |
