BICORN: Integrative Inference of De Novo Cis-Regulatory Modules

Prior transcription factor binding knowledge and target gene expression data are integrated in a Bayesian framework for functional cis-regulatory module inference. Using Gibbs sampling, we iteratively estimate transcription factor associations for each gene, regulation strength for each binding event and the hidden activity for each transcription factor.

Package details

AuthorXi Chen [aut, cre], Jianhua Xuan [aut]
MaintainerXi Chen <[email protected]>
LicenseGPL-2
Version0.1.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("BICORN")

Try the BICORN package in your browser

Any scripts or data that you put into this service are public.

BICORN documentation built on May 2, 2019, 2:05 a.m.