BPEC: Bayesian Phylogeographic and Ecological Clustering

Model-based clustering for phylogeographic data comprising mtDNA sequences and geographical locations along with optional environmental characteristics, aiming to identify migration events that led to homogeneous population clusters.

AuthorIoanna Manolopoulou, Axel Hille
Date of publication2016-04-06 09:49:06
MaintainerIoanna Manolopoulou <ioanna.manolopoulou@gmail.com>
LicenseGPL-2
Version1.0

View on CRAN

Files

BPEC
BPEC/src
BPEC/src/Rinterface.h
BPEC/src/matrices.h
BPEC/src/randomnumbers.c
BPEC/src/treelikelifunctions.h
BPEC/src/randomnumbers.h
BPEC/src/hashingfunctions.c
BPEC/src/loopfunctions.c
BPEC/src/hashingfunctions.h
BPEC/src/BPEC.c
BPEC/src/loopfunctions.h
BPEC/src/matrices.c
BPEC/src/treelikelifunctions.c
BPEC/src/cexcept.h
BPEC/NAMESPACE
BPEC/data
BPEC/data/TransalpinaRawSeqs.RData
BPEC/data/TransalpinaCoordsLocs.RData
BPEC/data/MacrocnemisCoordsLocs.RData
BPEC/data/MacrocnemisRawSeqs.RData
BPEC/data/CladeBrownFrogsCoordsLocs.RData
BPEC/data/CladeBrownFrogsRawSeqs.RData
BPEC/R
BPEC/R/BPEC.TreePlot.R BPEC/R/BPEC.ContourPlot.R BPEC/R/BPEC.TreeEdges.R BPEC/R/BPEC.Phylo2GE.R BPEC/R/BPEC.CovariatesPlot.R BPEC/R/BPEC.MCMC.R BPEC/R/BPEC-internal.R BPEC/R/BPEC.functions.R
BPEC/MD5
BPEC/DESCRIPTION
BPEC/man
BPEC/man/TransalpinaRawSeqs.Rd BPEC/man/MacrocnemisRawSeqs.Rd BPEC/man/BPEC.TreePlot.Rd BPEC/man/BPEC.MCMC.Rd BPEC/man/BPEC-package.Rd BPEC/man/BPEC.GeoTree.Rd BPEC/man/TransalpinaCoordsLocs.Rd BPEC/man/BPEC.ContourPlot.Rd BPEC/man/BPEC.CovariatesPlot.Rd BPEC/man/CladeBrownFrogsRawSeqs.Rd BPEC/man/MacrocnemisCoordsLocs.Rd BPEC/man/CladeBrownFrogsCoordsLocs.Rd

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