BPEC: Bayesian Phylogeographic and Ecological Clustering

Model-based clustering for phylogeographic data comprising mtDNA sequences and geographical locations along with optional environmental characteristics, aiming to identify migration events that led to homogeneous population clusters.

Install the latest version of this package by entering the following in R:
install.packages("BPEC")
AuthorIoanna Manolopoulou, Axel Hille
Date of publication2016-04-06 09:49:06
MaintainerIoanna Manolopoulou <ioanna.manolopoulou@gmail.com>
LicenseGPL-2
Version1.0

View on CRAN

Files

src
src/Rinterface.h
src/matrices.h
src/randomnumbers.c
src/treelikelifunctions.h
src/randomnumbers.h
src/hashingfunctions.c
src/loopfunctions.c
src/hashingfunctions.h
src/BPEC.c
src/loopfunctions.h
src/matrices.c
src/treelikelifunctions.c
src/cexcept.h
NAMESPACE
data
data/TransalpinaRawSeqs.RData
data/TransalpinaCoordsLocs.RData
data/MacrocnemisCoordsLocs.RData
data/MacrocnemisRawSeqs.RData
data/CladeBrownFrogsCoordsLocs.RData
data/CladeBrownFrogsRawSeqs.RData
R
R/BPEC.TreePlot.R R/BPEC.ContourPlot.R R/BPEC.TreeEdges.R R/BPEC.Phylo2GE.R R/BPEC.CovariatesPlot.R R/BPEC.MCMC.R R/BPEC-internal.R R/BPEC.functions.R
MD5
DESCRIPTION
man
man/TransalpinaRawSeqs.Rd man/MacrocnemisRawSeqs.Rd man/BPEC.TreePlot.Rd man/BPEC.MCMC.Rd man/BPEC-package.Rd man/BPEC.GeoTree.Rd man/TransalpinaCoordsLocs.Rd man/BPEC.ContourPlot.Rd man/BPEC.CovariatesPlot.Rd man/CladeBrownFrogsRawSeqs.Rd man/MacrocnemisCoordsLocs.Rd man/CladeBrownFrogsCoordsLocs.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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