Man pages for BPEC
Bayesian Phylogeographic and Ecological Clustering

bpecBayesian Phylogeographic and Ecological Clustering (BPEC)
bpec.contourPlotPlot contours of inferred clusters on geographical map
bpec.covariatesPlotPlot posterior marginal distribution of each covariate for...
bpec.geoTreePhylogeographic GoogleEarth plot
bpec.loadCoordsLoad location data
bpec.loadSeqLoad sequence data
bpec.mcmcMarkov chain Monte Carlo sampler for BPEC
bpec.treePlotTreeplot indicating cluster membership
CladeBrownFrogsCoordsLocsCoordinates and haplotypes for the Brown Frog dataset
CladeBrownFrogsRawSeqsSequences for the Brown Frog dataset
inputLoad location data
MacrocnemisCoordsLocsCoordinates and haplotypes for the R.macrocnemis Brown Frog...
MacrocnemisCoordsLocsMiniCoordinates and haplotypes for the R.macrocnemis Brown Frog...
MacrocnemisRawSeqsSequences for the R.macrocnemis Brown Frog dataset
output.clustLoad location data
output.mcmcLoad location data
output.treeLoad location data
preprocLoad location data
TransalpinaCoordsLocsCoordinates and haplotypes for the burnet moth dataset.
TransalpinaRawSeqsSequences for the burnet moth dataset.
BPEC documentation built on Aug. 30, 2018, 1:03 a.m.