bpec | Bayesian Phylogeographic and Ecological Clustering (BPEC) |
bpec.contourPlot | Plot contours of inferred clusters on geographical map |
bpec.covariatesPlot | Plot posterior marginal distribution of each covariate for... |
bpec.geoTree | Phylogeographic GoogleEarth plot |
bpec.loadCoords | Load location data |
bpec.loadSeq | Load sequence data |
bpec.mcmc | Markov chain Monte Carlo sampler for BPEC |
bpec.treePlot | Treeplot indicating cluster membership |
CladeBrownFrogsCoordsLocs | Coordinates and haplotypes for the Brown Frog dataset |
CladeBrownFrogsRawSeqs | Sequences for the Brown Frog dataset |
input | Load location data |
MacrocnemisCoordsLocs | Coordinates and haplotypes for the R.macrocnemis Brown Frog... |
MacrocnemisCoordsLocsMini | Coordinates and haplotypes for the R.macrocnemis Brown Frog... |
MacrocnemisRawSeqs | Sequences for the R.macrocnemis Brown Frog dataset |
output.clust | Load location data |
output.mcmc | Load location data |
output.tree | Load location data |
preproc | Load location data |
TransalpinaCoordsLocs | Coordinates and haplotypes for the burnet moth dataset. |
TransalpinaRawSeqs | Sequences for the burnet moth dataset. |
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