Man pages for BPEC
Bayesian Phylogeographic and Ecological Clustering
| bpec | Bayesian Phylogeographic and Ecological Clustering (BPEC) |
| bpec.contourPlot | Plot contours of inferred clusters on geographical map |
| bpec.covariatesPlot | Plot posterior marginal distribution of each covariate for... |
| bpec.geoTree | Phylogeographic GoogleEarth plot |
| bpec.loadCoords | Load location data |
| bpec.loadSeq | Load sequence data |
| bpec.mcmc | Markov chain Monte Carlo sampler for BPEC |
| bpec.treePlot | Treeplot indicating cluster membership |
| CladeBrownFrogsCoordsLocs | Coordinates and haplotypes for the Brown Frog dataset |
| CladeBrownFrogsRawSeqs | Sequences for the Brown Frog dataset |
| input | Load location data |
| MacrocnemisCoordsLocs | Coordinates and haplotypes for the R.macrocnemis Brown Frog... |
| MacrocnemisCoordsLocsMini | Coordinates and haplotypes for the R.macrocnemis Brown Frog... |
| MacrocnemisRawSeqs | Sequences for the R.macrocnemis Brown Frog dataset |
| output.clust | Load location data |
| output.mcmc | Load location data |
| output.tree | Load location data |
| preproc | Load location data |
| TransalpinaCoordsLocs | Coordinates and haplotypes for the burnet moth dataset. |
| TransalpinaRawSeqs | Sequences for the burnet moth dataset. |
