BacArena: Modeling Framework for Cellular Communities in their Environments

Can be used for simulation of organisms living in communities (Bauer and Zimmermann (2017) <doi:10.1371/journal.pcbi.1005544>). Each organism is represented individually and genome scale metabolic models determine the uptake and release of compounds. Biological processes such as movement, diffusion, chemotaxis and kinetics are available along with data analysis techniques.

Package details

AuthorEugen Bauer [aut], Johannes Zimmermann [aut, cre]
MaintainerJohannes Zimmermann <>
LicenseGPL-3 | file LICENSE
Package repositoryView on CRAN
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BacArena documentation built on July 2, 2020, 3:16 a.m.