Description Usage Arguments Value See Also Examples
The generic function dat2mat
simulates the event of mixing all substrates and organisms in the environment.
1 2 3 4 |
object |
An object of class Arena. |
Returns the presence/absence matrix of organisms on the grid based on the orgdat
slot of the Arena
class.
Arena-class
and getSublb
1 2 3 4 5 6 7 | data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
occmat <- dat2mat(arena)
image(occmat)
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