checkCorr: Function to show correlations of a simulated organism or...

Description Usage Arguments Details See Also Examples

Description

The generic function checkCorr returns the correlation matrix of several objects.

Usage

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checkCorr(object, corr = NULL, tocheck = list())

## S4 method for signature 'Eval'
checkCorr(object, corr = NULL, tocheck = list())

Arguments

object

An object of class Eval.

corr

A correlation matrix (getCorrM)

tocheck

A list with substrate, reactions or organism names whose correlations should be shown

Details

Returns correlation matrix which can be used for statistical analysis

See Also

Eval-class and getCorrM

Examples

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data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
checkCorr(eval, tocheck="o2")

BacArena documentation built on May 9, 2018, 5:04 p.m.