addEval: Function for adding a simulation step

Description Usage Arguments Details See Also Examples

Description

The generic function addEval adds results of a simulation step to an Eval object.

Usage

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addEval(object, arena, replace = F)

## S4 method for signature 'Eval'
addEval(object, arena, replace = F)

Arguments

object

An object of class Eval.

arena

An object of class Arena.

replace

A boolean variable indicating if the last simulation step should be replaced by the new simulation step arena.

Details

The function addEval can be used in iterations to manipulate an Arena object and store the results in an Eval object.

See Also

Eval-class and Arena-class

Examples

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data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
addEval(eval,arena)

BacArena documentation built on May 24, 2017, 1:02 a.m.

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